Hb_000052_020

Information

Type desease resistance
Description Gene Name: ABC_tran
Location Contig52: 70874-85449
Sequence    

Annotation

kegg
ID tcc:TCM_007432
description White-brown complex protein 11
nr
ID XP_012069282.1
description PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
swissprot
ID Q8RXN0
description ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1
trembl
ID A0A061E145
description White-brown complex protein 11 OS=Theobroma cacao GN=TCM_007432 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46665: 72388-73559 , PASA_asmbl_46668: 37405-74229 , PASA_asmbl_46670: 71171-72195 , PASA_asmbl_46671: 79879-83362 , PASA_asmbl_46672: 83943-84832 , PASA_asmbl_46673: 84225-85348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000052_020 0.0 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
2 Hb_002918_050 0.1377703185 transcription factor TF Family: SBP PREDICTED: mitochondrial arginine transporter BAC1-like isoform X1 [Jatropha curcas]
3 Hb_003734_110 0.1440286592 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
4 Hb_042202_050 0.1491610182 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
5 Hb_007747_210 0.1614896511 - - unnamed protein product [Vitis vinifera]
6 Hb_001284_010 0.1651750373 - - hypothetical protein CISIN_1g0279981mg, partial [Citrus sinensis]
7 Hb_000997_360 0.1714450171 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
8 Hb_001491_010 0.1718500799 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
9 Hb_000160_320 0.1749916164 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
10 Hb_001439_060 0.1837465094 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
11 Hb_042202_030 0.1876249936 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
12 Hb_011386_020 0.1946010555 - - unnamed protein product [Vitis vinifera]
13 Hb_005344_030 0.1970716019 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
14 Hb_012760_190 0.1972125397 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
15 Hb_003544_010 0.2000593345 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_002304_070 0.2018044624 - - -
17 Hb_000169_140 0.201946067 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
18 Hb_000337_050 0.2028371806 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
19 Hb_000125_210 0.2036139858 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
20 Hb_000160_300 0.2041460663 - - hypothetical protein POPTR_0004s08720g [Populus trichocarpa]

Gene co-expression network

sample Hb_000052_020 Hb_000052_020 Hb_002918_050 Hb_002918_050 Hb_000052_020--Hb_002918_050 Hb_003734_110 Hb_003734_110 Hb_000052_020--Hb_003734_110 Hb_042202_050 Hb_042202_050 Hb_000052_020--Hb_042202_050 Hb_007747_210 Hb_007747_210 Hb_000052_020--Hb_007747_210 Hb_001284_010 Hb_001284_010 Hb_000052_020--Hb_001284_010 Hb_000997_360 Hb_000997_360 Hb_000052_020--Hb_000997_360 Hb_002918_050--Hb_000997_360 Hb_002918_050--Hb_003734_110 Hb_000125_210 Hb_000125_210 Hb_002918_050--Hb_000125_210 Hb_002918_050--Hb_007747_210 Hb_042202_030 Hb_042202_030 Hb_002918_050--Hb_042202_030 Hb_003734_110--Hb_007747_210 Hb_001439_060 Hb_001439_060 Hb_003734_110--Hb_001439_060 Hb_011386_020 Hb_011386_020 Hb_003734_110--Hb_011386_020 Hb_000289_110 Hb_000289_110 Hb_003734_110--Hb_000289_110 Hb_001951_180 Hb_001951_180 Hb_003734_110--Hb_001951_180 Hb_042202_050--Hb_001284_010 Hb_000156_210 Hb_000156_210 Hb_042202_050--Hb_000156_210 Hb_006738_020 Hb_006738_020 Hb_042202_050--Hb_006738_020 Hb_042202_050--Hb_000997_360 Hb_146680_010 Hb_146680_010 Hb_042202_050--Hb_146680_010 Hb_007747_210--Hb_042202_030 Hb_079312_010 Hb_079312_010 Hb_007747_210--Hb_079312_010 Hb_005237_050 Hb_005237_050 Hb_007747_210--Hb_005237_050 Hb_009455_020 Hb_009455_020 Hb_007747_210--Hb_009455_020 Hb_000215_070 Hb_000215_070 Hb_007747_210--Hb_000215_070 Hb_003020_220 Hb_003020_220 Hb_007747_210--Hb_003020_220 Hb_019113_020 Hb_019113_020 Hb_001284_010--Hb_019113_020 Hb_003050_250 Hb_003050_250 Hb_001284_010--Hb_003050_250 Hb_000337_050 Hb_000337_050 Hb_001284_010--Hb_000337_050 Hb_001953_080 Hb_001953_080 Hb_001284_010--Hb_001953_080 Hb_000997_360--Hb_000125_210 Hb_000635_210 Hb_000635_210 Hb_000997_360--Hb_000635_210 Hb_001218_040 Hb_001218_040 Hb_000997_360--Hb_001218_040 Hb_021443_080 Hb_021443_080 Hb_000997_360--Hb_021443_080 Hb_001775_110 Hb_001775_110 Hb_000997_360--Hb_001775_110 Hb_011512_040 Hb_011512_040 Hb_000997_360--Hb_011512_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.55854 1.60066 2.41807 2.88049 4.02105 8.37117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3089 18.8979 19.5234 12.668 33.6952

CAGE analysis