Hb_002918_050

Information

Type transcription factor
Description TF Family: SBP
Location Contig2918: 43448-51690
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05500g
description mitochondrial substrate carrier family protein
nr
ID XP_012091638.1
description PREDICTED: mitochondrial arginine transporter BAC1-like isoform X1 [Jatropha curcas]
swissprot
ID Q84UC7
description Mitochondrial arginine transporter BAC1 OS=Arabidopsis thaliana GN=BAC1 PE=1 SV=1
trembl
ID B9N3H8
description Mitochondrial substrate carrier family protein OS=Populus trichocarpa GN=POPTR_0011s05500g PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial arginine transporter bac1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30588: 47883-49176 , PASA_asmbl_30590: 49277-51233 , PASA_asmbl_30591: 49301-49934 , PASA_asmbl_30592: 49570-49867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_050 0.0 transcription factor TF Family: SBP PREDICTED: mitochondrial arginine transporter BAC1-like isoform X1 [Jatropha curcas]
2 Hb_000052_020 0.1377703185 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
3 Hb_000997_360 0.1447741957 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
4 Hb_003734_110 0.1574741196 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
5 Hb_000125_210 0.1695092551 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
6 Hb_007747_210 0.1805427086 - - unnamed protein product [Vitis vinifera]
7 Hb_042202_030 0.1884110955 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
8 Hb_000200_290 0.1894794389 - - PREDICTED: elongator complex protein 2 isoform X1 [Jatropha curcas]
9 Hb_001059_170 0.1898775179 - - hexose transporter 1 [Hevea brasiliensis]
10 Hb_004346_030 0.1906048727 - - sucrose phosphate phosphatase, putative [Ricinus communis]
11 Hb_005344_030 0.1909558786 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
12 Hb_000169_140 0.1923399218 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
13 Hb_023313_010 0.1945494635 - - PREDICTED: linolenate hydroperoxide lyase, chloroplastic [Jatropha curcas]
14 Hb_000160_320 0.1947774694 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
15 Hb_001357_120 0.1948602961 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
16 Hb_001153_020 0.1973259803 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
17 Hb_021888_070 0.1979055304 - - Putative CCR4-associated factor 1 like 11 [Glycine soja]
18 Hb_002260_030 0.202088918 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
19 Hb_042202_050 0.2046816098 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
20 Hb_161175_010 0.2075032305 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]

Gene co-expression network

sample Hb_002918_050 Hb_002918_050 Hb_000052_020 Hb_000052_020 Hb_002918_050--Hb_000052_020 Hb_000997_360 Hb_000997_360 Hb_002918_050--Hb_000997_360 Hb_003734_110 Hb_003734_110 Hb_002918_050--Hb_003734_110 Hb_000125_210 Hb_000125_210 Hb_002918_050--Hb_000125_210 Hb_007747_210 Hb_007747_210 Hb_002918_050--Hb_007747_210 Hb_042202_030 Hb_042202_030 Hb_002918_050--Hb_042202_030 Hb_000052_020--Hb_003734_110 Hb_042202_050 Hb_042202_050 Hb_000052_020--Hb_042202_050 Hb_000052_020--Hb_007747_210 Hb_001284_010 Hb_001284_010 Hb_000052_020--Hb_001284_010 Hb_000052_020--Hb_000997_360 Hb_000997_360--Hb_000125_210 Hb_000635_210 Hb_000635_210 Hb_000997_360--Hb_000635_210 Hb_001218_040 Hb_001218_040 Hb_000997_360--Hb_001218_040 Hb_021443_080 Hb_021443_080 Hb_000997_360--Hb_021443_080 Hb_001775_110 Hb_001775_110 Hb_000997_360--Hb_001775_110 Hb_011512_040 Hb_011512_040 Hb_000997_360--Hb_011512_040 Hb_003734_110--Hb_007747_210 Hb_001439_060 Hb_001439_060 Hb_003734_110--Hb_001439_060 Hb_011386_020 Hb_011386_020 Hb_003734_110--Hb_011386_020 Hb_000289_110 Hb_000289_110 Hb_003734_110--Hb_000289_110 Hb_001951_180 Hb_001951_180 Hb_003734_110--Hb_001951_180 Hb_000673_020 Hb_000673_020 Hb_000125_210--Hb_000673_020 Hb_161175_010 Hb_161175_010 Hb_000125_210--Hb_161175_010 Hb_000096_150 Hb_000096_150 Hb_000125_210--Hb_000096_150 Hb_000318_160 Hb_000318_160 Hb_000125_210--Hb_000318_160 Hb_003349_080 Hb_003349_080 Hb_000125_210--Hb_003349_080 Hb_000175_030 Hb_000175_030 Hb_000125_210--Hb_000175_030 Hb_007747_210--Hb_042202_030 Hb_079312_010 Hb_079312_010 Hb_007747_210--Hb_079312_010 Hb_005237_050 Hb_005237_050 Hb_007747_210--Hb_005237_050 Hb_009455_020 Hb_009455_020 Hb_007747_210--Hb_009455_020 Hb_000215_070 Hb_000215_070 Hb_007747_210--Hb_000215_070 Hb_003020_220 Hb_003020_220 Hb_007747_210--Hb_003020_220 Hb_000020_120 Hb_000020_120 Hb_042202_030--Hb_000020_120 Hb_003688_150 Hb_003688_150 Hb_042202_030--Hb_003688_150 Hb_002799_070 Hb_002799_070 Hb_042202_030--Hb_002799_070 Hb_042202_030--Hb_079312_010 Hb_000116_430 Hb_000116_430 Hb_042202_030--Hb_000116_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.63298 2.17938 6.23138 3.2853 3.36804 3.38466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.135 14.7898 24.8263 13.5409 28.2255

CAGE analysis