Hb_042202_050

Information

Type -
Description -
Location Contig42202: 48492-52316
Sequence    

Annotation

kegg
ID fve:101314142
description uncharacterized protein LOC101314142 isoform 1
nr
ID DAA52526.1
description TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
swissprot
ID -
description -
trembl
ID A0A0D3D382
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0009507
description leucine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41741: 21463-52456
cDNA
(Sanger)
(ID:Location)		 010_J06.ab1: 21465-52348 , 036_C03.ab1: 21465-52365

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042202_050 0.0 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
2 Hb_001284_010 0.1280556132 - - hypothetical protein CISIN_1g0279981mg, partial [Citrus sinensis]
3 Hb_000052_020 0.1491610182 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
4 Hb_000156_210 0.1744142282 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
5 Hb_006738_020 0.1866688566 - - hypothetical protein VITISV_010510 [Vitis vinifera]
6 Hb_000997_360 0.1910887176 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
7 Hb_146680_010 0.1964156524 - - hypothetical protein JCGZ_15486 [Jatropha curcas]
8 Hb_000635_210 0.1966391358 - - unknown [Populus trichocarpa]
9 Hb_001491_010 0.2007177641 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
10 Hb_019113_020 0.2020859131 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
11 Hb_001728_060 0.2042350946 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
12 Hb_002918_050 0.2046816098 transcription factor TF Family: SBP PREDICTED: mitochondrial arginine transporter BAC1-like isoform X1 [Jatropha curcas]
13 Hb_008698_010 0.2055367122 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_007747_210 0.2076590067 - - unnamed protein product [Vitis vinifera]
15 Hb_003050_250 0.2102795077 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
16 Hb_005344_030 0.2121296162 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
17 Hb_012022_170 0.2132766358 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
18 Hb_001240_010 0.214117423 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
19 Hb_012760_190 0.2144376819 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
20 Hb_004125_040 0.2146274507 - - -

Gene co-expression network

sample Hb_042202_050 Hb_042202_050 Hb_001284_010 Hb_001284_010 Hb_042202_050--Hb_001284_010 Hb_000052_020 Hb_000052_020 Hb_042202_050--Hb_000052_020 Hb_000156_210 Hb_000156_210 Hb_042202_050--Hb_000156_210 Hb_006738_020 Hb_006738_020 Hb_042202_050--Hb_006738_020 Hb_000997_360 Hb_000997_360 Hb_042202_050--Hb_000997_360 Hb_146680_010 Hb_146680_010 Hb_042202_050--Hb_146680_010 Hb_019113_020 Hb_019113_020 Hb_001284_010--Hb_019113_020 Hb_003050_250 Hb_003050_250 Hb_001284_010--Hb_003050_250 Hb_000337_050 Hb_000337_050 Hb_001284_010--Hb_000337_050 Hb_001284_010--Hb_000052_020 Hb_001953_080 Hb_001953_080 Hb_001284_010--Hb_001953_080 Hb_002918_050 Hb_002918_050 Hb_000052_020--Hb_002918_050 Hb_003734_110 Hb_003734_110 Hb_000052_020--Hb_003734_110 Hb_007747_210 Hb_007747_210 Hb_000052_020--Hb_007747_210 Hb_000052_020--Hb_000997_360 Hb_007632_170 Hb_007632_170 Hb_000156_210--Hb_007632_170 Hb_019040_030 Hb_019040_030 Hb_000156_210--Hb_019040_030 Hb_000191_080 Hb_000191_080 Hb_000156_210--Hb_000191_080 Hb_005846_030 Hb_005846_030 Hb_000156_210--Hb_005846_030 Hb_008698_010 Hb_008698_010 Hb_000156_210--Hb_008698_010 Hb_002078_300 Hb_002078_300 Hb_000156_210--Hb_002078_300 Hb_002872_050 Hb_002872_050 Hb_006738_020--Hb_002872_050 Hb_000056_070 Hb_000056_070 Hb_006738_020--Hb_000056_070 Hb_000072_200 Hb_000072_200 Hb_006738_020--Hb_000072_200 Hb_003050_280 Hb_003050_280 Hb_006738_020--Hb_003050_280 Hb_000457_290 Hb_000457_290 Hb_006738_020--Hb_000457_290 Hb_000208_180 Hb_000208_180 Hb_006738_020--Hb_000208_180 Hb_000125_210 Hb_000125_210 Hb_000997_360--Hb_000125_210 Hb_000635_210 Hb_000635_210 Hb_000997_360--Hb_000635_210 Hb_001218_040 Hb_001218_040 Hb_000997_360--Hb_001218_040 Hb_021443_080 Hb_021443_080 Hb_000997_360--Hb_021443_080 Hb_001775_110 Hb_001775_110 Hb_000997_360--Hb_001775_110 Hb_011512_040 Hb_011512_040 Hb_000997_360--Hb_011512_040 Hb_079312_010 Hb_079312_010 Hb_146680_010--Hb_079312_010 Hb_146680_010--Hb_011512_040 Hb_011457_050 Hb_011457_050 Hb_146680_010--Hb_011457_050 Hb_004324_270 Hb_004324_270 Hb_146680_010--Hb_004324_270 Hb_005446_010 Hb_005446_010 Hb_146680_010--Hb_005446_010 Hb_002232_060 Hb_002232_060 Hb_146680_010--Hb_002232_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.121663 0.0379276 0.0564918 0.185146 0.209989 0.132436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.517312 0.813296 0.601439 0.303963 1.19939

CAGE analysis