Hb_091194_010

Information

Type -
Description -
Location Contig91194: 1697-3141
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05430g
description POPTRDRAFT_652765; hypothetical protein
nr
ID XP_006381020.1
description hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
swissprot
ID F4J3G5
description Carboxyl-terminal-processing peptidase 3, chloroplastic OS=Arabidopsis thaliana GN=CTPA3 PE=3 SV=1
trembl
ID U5GBK8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s05430g PE=4 SV=1
Gene Ontology
ID GO:0008236
description carboxyl-terminal-processing peptidase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_091194_010 0.0 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
2 Hb_000429_090 0.1177377106 - - PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]
3 Hb_000429_100 0.1677703514 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
4 Hb_000169_140 0.1764643925 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
5 Hb_001136_060 0.1774898516 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
6 Hb_002809_150 0.1817803023 transcription factor TF Family: M-type hypothetical protein CISIN_1g0283632mg, partial [Citrus sinensis]
7 Hb_000705_290 0.1859921079 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
8 Hb_000529_220 0.1913929146 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000574_460 0.1925152241 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
10 Hb_002260_030 0.1961651456 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
11 Hb_000530_120 0.1983684183 - - copper transport protein ATOX1 [Hevea brasiliensis]
12 Hb_001493_120 0.1984501899 - - -
13 Hb_003849_270 0.1989432303 - - -
14 Hb_003777_210 0.2035545267 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
15 Hb_003349_080 0.2055631376 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
16 Hb_000272_140 0.2059368811 - - Protein bem46, putative [Ricinus communis]
17 Hb_007520_010 0.2059798473 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
18 Hb_005344_030 0.2086645652 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
19 Hb_010582_010 0.2110562717 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
20 Hb_000318_160 0.2132436005 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]

Gene co-expression network

sample Hb_091194_010 Hb_091194_010 Hb_000429_090 Hb_000429_090 Hb_091194_010--Hb_000429_090 Hb_000429_100 Hb_000429_100 Hb_091194_010--Hb_000429_100 Hb_000169_140 Hb_000169_140 Hb_091194_010--Hb_000169_140 Hb_001136_060 Hb_001136_060 Hb_091194_010--Hb_001136_060 Hb_002809_150 Hb_002809_150 Hb_091194_010--Hb_002809_150 Hb_000705_290 Hb_000705_290 Hb_091194_010--Hb_000705_290 Hb_000429_090--Hb_002809_150 Hb_001493_120 Hb_001493_120 Hb_000429_090--Hb_001493_120 Hb_000530_120 Hb_000530_120 Hb_000429_090--Hb_000530_120 Hb_003849_270 Hb_003849_270 Hb_000429_090--Hb_003849_270 Hb_000429_090--Hb_001136_060 Hb_000429_100--Hb_001136_060 Hb_001712_020 Hb_001712_020 Hb_000429_100--Hb_001712_020 Hb_001435_020 Hb_001435_020 Hb_000429_100--Hb_001435_020 Hb_010582_010 Hb_010582_010 Hb_000429_100--Hb_010582_010 Hb_003349_030 Hb_003349_030 Hb_000429_100--Hb_003349_030 Hb_000210_220 Hb_000210_220 Hb_000169_140--Hb_000210_220 Hb_003349_080 Hb_003349_080 Hb_000169_140--Hb_003349_080 Hb_000529_220 Hb_000529_220 Hb_000169_140--Hb_000529_220 Hb_000997_360 Hb_000997_360 Hb_000169_140--Hb_000997_360 Hb_028487_030 Hb_028487_030 Hb_000169_140--Hb_028487_030 Hb_002260_030 Hb_002260_030 Hb_000169_140--Hb_002260_030 Hb_000042_200 Hb_000042_200 Hb_001136_060--Hb_000042_200 Hb_000834_030 Hb_000834_030 Hb_001136_060--Hb_000834_030 Hb_000445_490 Hb_000445_490 Hb_001136_060--Hb_000445_490 Hb_001136_060--Hb_000705_290 Hb_033153_060 Hb_033153_060 Hb_001136_060--Hb_033153_060 Hb_001136_060--Hb_003349_080 Hb_003777_040 Hb_003777_040 Hb_002809_150--Hb_003777_040 Hb_000975_230 Hb_000975_230 Hb_002809_150--Hb_000975_230 Hb_010402_050 Hb_010402_050 Hb_002809_150--Hb_010402_050 Hb_002518_290 Hb_002518_290 Hb_002809_150--Hb_002518_290 Hb_002809_150--Hb_001493_120 Hb_161175_010 Hb_161175_010 Hb_000705_290--Hb_161175_010 Hb_006442_020 Hb_006442_020 Hb_000705_290--Hb_006442_020 Hb_000272_140 Hb_000272_140 Hb_000705_290--Hb_000272_140 Hb_000705_290--Hb_000042_200 Hb_001284_030 Hb_001284_030 Hb_000705_290--Hb_001284_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.16277 1.29865 6.59637 9.47162 0.554616 13.5755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.2745 28.2572 19.3235 4.18699 29.4806

CAGE analysis