Hb_000429_100

Information

Type -
Description -
Location Contig429: 90193-91384
Sequence    

Annotation

kegg
ID mdm:103454371
description C-terminal processing peptidase, chloroplastic-like
nr
ID XP_006381020.1
description hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GBK8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s05430g PE=4 SV=1
Gene Ontology
ID GO:0008236
description carboxyl-terminal-processing peptidase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42092: 72962-91419 , PASA_asmbl_42095: 89610-91419
cDNA
(Sanger)
(ID:Location)		 015_O21.ab1: 90197-91419

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_100 0.0 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
2 Hb_001136_060 0.1673434449 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
3 Hb_091194_010 0.1677703514 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
4 Hb_001712_020 0.1688859705 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
5 Hb_001435_020 0.1769341001 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
6 Hb_010582_010 0.1802385032 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
7 Hb_003349_030 0.1806528925 - - PREDICTED: uncharacterized protein LOC105628283 [Jatropha curcas]
8 Hb_002609_210 0.1809330559 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
9 Hb_003050_280 0.1830398042 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
10 Hb_001490_030 0.1833124303 - - PREDICTED: psbP domain-containing protein 6, chloroplastic [Jatropha curcas]
11 Hb_000622_240 0.1844141525 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
12 Hb_001014_170 0.1868215131 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
13 Hb_001318_260 0.1870324514 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
14 Hb_004125_040 0.1886610727 - - -
15 Hb_000390_110 0.1893816791 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
16 Hb_009158_020 0.189828032 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
17 Hb_000877_080 0.1899731465 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
18 Hb_003349_080 0.1905037179 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
19 Hb_003849_150 0.1918026712 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
20 Hb_002872_050 0.1923899533 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000429_100 Hb_000429_100 Hb_001136_060 Hb_001136_060 Hb_000429_100--Hb_001136_060 Hb_091194_010 Hb_091194_010 Hb_000429_100--Hb_091194_010 Hb_001712_020 Hb_001712_020 Hb_000429_100--Hb_001712_020 Hb_001435_020 Hb_001435_020 Hb_000429_100--Hb_001435_020 Hb_010582_010 Hb_010582_010 Hb_000429_100--Hb_010582_010 Hb_003349_030 Hb_003349_030 Hb_000429_100--Hb_003349_030 Hb_000042_200 Hb_000042_200 Hb_001136_060--Hb_000042_200 Hb_000834_030 Hb_000834_030 Hb_001136_060--Hb_000834_030 Hb_000445_490 Hb_000445_490 Hb_001136_060--Hb_000445_490 Hb_000705_290 Hb_000705_290 Hb_001136_060--Hb_000705_290 Hb_033153_060 Hb_033153_060 Hb_001136_060--Hb_033153_060 Hb_003349_080 Hb_003349_080 Hb_001136_060--Hb_003349_080 Hb_000429_090 Hb_000429_090 Hb_091194_010--Hb_000429_090 Hb_000169_140 Hb_000169_140 Hb_091194_010--Hb_000169_140 Hb_091194_010--Hb_001136_060 Hb_002809_150 Hb_002809_150 Hb_091194_010--Hb_002809_150 Hb_091194_010--Hb_000705_290 Hb_000877_080 Hb_000877_080 Hb_001712_020--Hb_000877_080 Hb_005846_030 Hb_005846_030 Hb_001712_020--Hb_005846_030 Hb_011689_120 Hb_011689_120 Hb_001712_020--Hb_011689_120 Hb_006846_150 Hb_006846_150 Hb_001712_020--Hb_006846_150 Hb_014834_130 Hb_014834_130 Hb_001712_020--Hb_014834_130 Hb_000317_260 Hb_000317_260 Hb_001712_020--Hb_000317_260 Hb_000622_240 Hb_000622_240 Hb_001435_020--Hb_000622_240 Hb_001435_020--Hb_003349_030 Hb_001435_020--Hb_001712_020 Hb_001790_030 Hb_001790_030 Hb_001435_020--Hb_001790_030 Hb_001435_020--Hb_005846_030 Hb_000390_110 Hb_000390_110 Hb_001435_020--Hb_000390_110 Hb_001304_140 Hb_001304_140 Hb_010582_010--Hb_001304_140 Hb_000365_080 Hb_000365_080 Hb_010582_010--Hb_000365_080 Hb_054074_010 Hb_054074_010 Hb_010582_010--Hb_054074_010 Hb_005211_190 Hb_005211_190 Hb_010582_010--Hb_005211_190 Hb_002609_210 Hb_002609_210 Hb_010582_010--Hb_002609_210 Hb_001424_020 Hb_001424_020 Hb_010582_010--Hb_001424_020 Hb_003349_030--Hb_000877_080 Hb_003349_030--Hb_001790_030 Hb_000056_070 Hb_000056_070 Hb_003349_030--Hb_000056_070 Hb_003050_250 Hb_003050_250 Hb_003349_030--Hb_003050_250 Hb_003349_030--Hb_001712_020 Hb_001019_150 Hb_001019_150 Hb_003349_030--Hb_001019_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25027 3.62689 9.00905 5.25332 2.3644 6.15903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.8562 17.9472 6.76761 3.43053 18.0987

CAGE analysis