Hb_000429_090

Information

Type -
Description -
Location Contig429: 73554-76995
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05430g
description POPTRDRAFT_652765; hypothetical protein
nr
ID XP_012073011.1
description PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]
swissprot
ID F4J3G5
description Carboxyl-terminal-processing peptidase 3, chloroplastic OS=Arabidopsis thaliana GN=CTPA3 PE=3 SV=1
trembl
ID A0A067KZS1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06803 PE=4 SV=1
Gene Ontology
ID GO:0008236
description carboxyl-terminal-processing peptidase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42092: 72962-91419 , PASA_asmbl_42093: 72962-74217 , PASA_asmbl_42094: 74319-74483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_090 0.0 - - PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]
2 Hb_091194_010 0.1177377106 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
3 Hb_002809_150 0.1547208989 transcription factor TF Family: M-type hypothetical protein CISIN_1g0283632mg, partial [Citrus sinensis]
4 Hb_001493_120 0.1583232395 - - -
5 Hb_000530_120 0.1652398971 - - copper transport protein ATOX1 [Hevea brasiliensis]
6 Hb_003849_270 0.1851277419 - - -
7 Hb_001136_060 0.1928057139 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
8 Hb_000169_140 0.1954127863 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
9 Hb_002936_080 0.1973121419 - - Protein bem46, putative [Ricinus communis]
10 Hb_000574_460 0.2004951773 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
11 Hb_000310_070 0.2008280115 - - BnaA06g08330D [Brassica napus]
12 Hb_005344_030 0.2023330518 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
13 Hb_007520_010 0.205476729 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
14 Hb_000429_100 0.2069233741 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
15 Hb_002260_030 0.209777053 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
16 Hb_000975_230 0.2125531088 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
17 Hb_000705_290 0.2130651795 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
18 Hb_000445_490 0.2143882605 - - -
19 Hb_003777_040 0.2179561025 - - PREDICTED: sm-like protein LSM3A [Jatropha curcas]
20 Hb_000270_610 0.2205964951 - - PREDICTED: uncharacterized protein At5g50100, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000429_090 Hb_000429_090 Hb_091194_010 Hb_091194_010 Hb_000429_090--Hb_091194_010 Hb_002809_150 Hb_002809_150 Hb_000429_090--Hb_002809_150 Hb_001493_120 Hb_001493_120 Hb_000429_090--Hb_001493_120 Hb_000530_120 Hb_000530_120 Hb_000429_090--Hb_000530_120 Hb_003849_270 Hb_003849_270 Hb_000429_090--Hb_003849_270 Hb_001136_060 Hb_001136_060 Hb_000429_090--Hb_001136_060 Hb_000429_100 Hb_000429_100 Hb_091194_010--Hb_000429_100 Hb_000169_140 Hb_000169_140 Hb_091194_010--Hb_000169_140 Hb_091194_010--Hb_001136_060 Hb_091194_010--Hb_002809_150 Hb_000705_290 Hb_000705_290 Hb_091194_010--Hb_000705_290 Hb_003777_040 Hb_003777_040 Hb_002809_150--Hb_003777_040 Hb_000975_230 Hb_000975_230 Hb_002809_150--Hb_000975_230 Hb_010402_050 Hb_010402_050 Hb_002809_150--Hb_010402_050 Hb_002518_290 Hb_002518_290 Hb_002809_150--Hb_002518_290 Hb_002809_150--Hb_001493_120 Hb_000574_460 Hb_000574_460 Hb_001493_120--Hb_000574_460 Hb_001493_120--Hb_091194_010 Hb_001493_120--Hb_001136_060 Hb_001284_010 Hb_001284_010 Hb_001493_120--Hb_001284_010 Hb_000530_120--Hb_003849_270 Hb_000318_160 Hb_000318_160 Hb_000530_120--Hb_000318_160 Hb_000445_490 Hb_000445_490 Hb_000530_120--Hb_000445_490 Hb_000530_120--Hb_010402_050 Hb_003050_280 Hb_003050_280 Hb_000530_120--Hb_003050_280 Hb_000270_610 Hb_000270_610 Hb_000530_120--Hb_000270_610 Hb_000928_130 Hb_000928_130 Hb_003849_270--Hb_000928_130 Hb_003849_270--Hb_003050_280 Hb_006738_030 Hb_006738_030 Hb_003849_270--Hb_006738_030 Hb_003849_270--Hb_000318_160 Hb_003849_270--Hb_003777_040 Hb_000042_200 Hb_000042_200 Hb_001136_060--Hb_000042_200 Hb_000834_030 Hb_000834_030 Hb_001136_060--Hb_000834_030 Hb_001136_060--Hb_000445_490 Hb_001136_060--Hb_000705_290 Hb_033153_060 Hb_033153_060 Hb_001136_060--Hb_033153_060 Hb_003349_080 Hb_003349_080 Hb_001136_060--Hb_003349_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.77026 1.80999 8.18278 16.1679 1.88249 8.49898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.3729 56.382 33.796 6.18534 54.9196

CAGE analysis