Hb_000270_610

Information

Type -
Description -
Location Contig270: 505400-508127
Sequence    

Annotation

kegg
ID rcu:RCOM_0366590
description hypothetical protein
nr
ID XP_012080128.1
description PREDICTED: uncharacterized protein At5g50100, mitochondrial [Jatropha curcas]
swissprot
ID Q8W485
description Uncharacterized protein At5g50100, mitochondrial OS=Arabidopsis thaliana GN=At5g50100 PE=2 SV=1
trembl
ID A0A067K4S3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11518 PE=4 SV=1
Gene Ontology
ID GO:0010264
description thiol-disulfide oxidoreductase dcc isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28243: 505443-508070 , PASA_asmbl_28244: 506122-506291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_610 0.0 - - PREDICTED: uncharacterized protein At5g50100, mitochondrial [Jatropha curcas]
2 Hb_000111_100 0.138898755 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
3 Hb_002391_220 0.1468925022 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
4 Hb_000530_120 0.1583960833 - - copper transport protein ATOX1 [Hevea brasiliensis]
5 Hb_000445_490 0.1612305307 - - -
6 Hb_000260_200 0.1617473211 - - -
7 Hb_000599_280 0.1635122427 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
8 Hb_001434_070 0.1718435866 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
9 Hb_076693_040 0.1740008602 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
10 Hb_000454_180 0.174039683 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
11 Hb_003849_270 0.1744117952 - - -
12 Hb_024714_050 0.1749519408 - - hypothetical protein CICLE_v100188992mg, partial [Citrus clementina]
13 Hb_001823_060 0.1754717721 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
14 Hb_003777_040 0.1772023382 - - PREDICTED: sm-like protein LSM3A [Jatropha curcas]
15 Hb_147752_010 0.1803129431 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
16 Hb_008887_040 0.1804500168 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
17 Hb_011377_020 0.1809730222 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
18 Hb_000270_720 0.1813030356 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
19 Hb_003181_050 0.1873098272 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
20 Hb_002759_110 0.1885752474 - - RNA-binding family protein, putative isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000270_610 Hb_000270_610 Hb_000111_100 Hb_000111_100 Hb_000270_610--Hb_000111_100 Hb_002391_220 Hb_002391_220 Hb_000270_610--Hb_002391_220 Hb_000530_120 Hb_000530_120 Hb_000270_610--Hb_000530_120 Hb_000445_490 Hb_000445_490 Hb_000270_610--Hb_000445_490 Hb_000260_200 Hb_000260_200 Hb_000270_610--Hb_000260_200 Hb_000599_280 Hb_000599_280 Hb_000270_610--Hb_000599_280 Hb_000645_140 Hb_000645_140 Hb_000111_100--Hb_000645_140 Hb_147752_010 Hb_147752_010 Hb_000111_100--Hb_147752_010 Hb_000878_020 Hb_000878_020 Hb_000111_100--Hb_000878_020 Hb_027472_160 Hb_027472_160 Hb_000111_100--Hb_027472_160 Hb_000062_390 Hb_000062_390 Hb_000111_100--Hb_000062_390 Hb_000093_110 Hb_000093_110 Hb_000111_100--Hb_000093_110 Hb_002391_220--Hb_000260_200 Hb_000069_140 Hb_000069_140 Hb_002391_220--Hb_000069_140 Hb_002391_220--Hb_000445_490 Hb_001304_140 Hb_001304_140 Hb_002391_220--Hb_001304_140 Hb_000270_720 Hb_000270_720 Hb_002391_220--Hb_000270_720 Hb_002391_220--Hb_000599_280 Hb_003849_270 Hb_003849_270 Hb_000530_120--Hb_003849_270 Hb_000318_160 Hb_000318_160 Hb_000530_120--Hb_000318_160 Hb_000530_120--Hb_000445_490 Hb_010402_050 Hb_010402_050 Hb_000530_120--Hb_010402_050 Hb_003050_280 Hb_003050_280 Hb_000530_120--Hb_003050_280 Hb_000445_490--Hb_000318_160 Hb_000928_130 Hb_000928_130 Hb_000445_490--Hb_000928_130 Hb_001240_020 Hb_001240_020 Hb_000445_490--Hb_001240_020 Hb_000975_230 Hb_000975_230 Hb_000445_490--Hb_000975_230 Hb_000224_140 Hb_000224_140 Hb_000445_490--Hb_000224_140 Hb_000163_210 Hb_000163_210 Hb_000260_200--Hb_000163_210 Hb_000260_200--Hb_000069_140 Hb_001424_020 Hb_001424_020 Hb_000260_200--Hb_001424_020 Hb_001785_040 Hb_001785_040 Hb_000260_200--Hb_001785_040 Hb_012539_020 Hb_012539_020 Hb_000260_200--Hb_012539_020 Hb_011377_020 Hb_011377_020 Hb_000599_280--Hb_011377_020 Hb_000599_280--Hb_000270_720 Hb_004007_180 Hb_004007_180 Hb_000599_280--Hb_004007_180 Hb_000454_180 Hb_000454_180 Hb_000599_280--Hb_000454_180 Hb_000172_420 Hb_000172_420 Hb_000599_280--Hb_000172_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.42961 2.10286 19.5637 13.2816 5.92557 10.6861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.0243 132.95 26.1389 6.30748 37.438

CAGE analysis