Hb_003849_270

Information

Type -
Description -
Location Contig3849: 213805-214946
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005488
description l-type lectin-domain containing receptor kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_270 0.0 - - -
2 Hb_000530_120 0.1361152272 - - copper transport protein ATOX1 [Hevea brasiliensis]
3 Hb_000928_130 0.1501382713 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_003050_280 0.152705242 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
5 Hb_006738_030 0.155400085 - - Ras-related protein Rab7 [Morus notabilis]
6 Hb_000318_160 0.1557454348 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
7 Hb_003777_040 0.1562012102 - - PREDICTED: sm-like protein LSM3A [Jatropha curcas]
8 Hb_000445_490 0.1565420705 - - -
9 Hb_001136_060 0.1605309268 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
10 Hb_000056_070 0.1623481389 - - -
11 Hb_147752_010 0.1626806891 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
12 Hb_000577_090 0.1690182281 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
13 Hb_003880_030 0.1706500736 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
14 Hb_006738_020 0.1717056984 - - hypothetical protein VITISV_010510 [Vitis vinifera]
15 Hb_000270_610 0.1744117952 - - PREDICTED: uncharacterized protein At5g50100, mitochondrial [Jatropha curcas]
16 Hb_001240_020 0.1763251765 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
17 Hb_003349_080 0.1769121229 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
18 Hb_000975_230 0.1778918298 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
19 Hb_073490_020 0.1801408528 - - hypothetical protein PRUPE_ppa016333mg, partial [Prunus persica]
20 Hb_000111_100 0.1805840272 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]

Gene co-expression network

sample Hb_003849_270 Hb_003849_270 Hb_000530_120 Hb_000530_120 Hb_003849_270--Hb_000530_120 Hb_000928_130 Hb_000928_130 Hb_003849_270--Hb_000928_130 Hb_003050_280 Hb_003050_280 Hb_003849_270--Hb_003050_280 Hb_006738_030 Hb_006738_030 Hb_003849_270--Hb_006738_030 Hb_000318_160 Hb_000318_160 Hb_003849_270--Hb_000318_160 Hb_003777_040 Hb_003777_040 Hb_003849_270--Hb_003777_040 Hb_000530_120--Hb_000318_160 Hb_000445_490 Hb_000445_490 Hb_000530_120--Hb_000445_490 Hb_010402_050 Hb_010402_050 Hb_000530_120--Hb_010402_050 Hb_000530_120--Hb_003050_280 Hb_000270_610 Hb_000270_610 Hb_000530_120--Hb_000270_610 Hb_002026_120 Hb_002026_120 Hb_000928_130--Hb_002026_120 Hb_000096_150 Hb_000096_150 Hb_000928_130--Hb_000096_150 Hb_000928_130--Hb_000318_160 Hb_000928_130--Hb_000445_490 Hb_023344_050 Hb_023344_050 Hb_000928_130--Hb_023344_050 Hb_001240_020 Hb_001240_020 Hb_000928_130--Hb_001240_020 Hb_003050_280--Hb_000318_160 Hb_004125_040 Hb_004125_040 Hb_003050_280--Hb_004125_040 Hb_003349_080 Hb_003349_080 Hb_003050_280--Hb_003349_080 Hb_000224_140 Hb_000224_140 Hb_003050_280--Hb_000224_140 Hb_002872_050 Hb_002872_050 Hb_003050_280--Hb_002872_050 Hb_007576_170 Hb_007576_170 Hb_003050_280--Hb_007576_170 Hb_006738_030--Hb_000928_130 Hb_006738_030--Hb_002026_120 Hb_006738_030--Hb_001240_020 Hb_147752_010 Hb_147752_010 Hb_006738_030--Hb_147752_010 Hb_006738_020 Hb_006738_020 Hb_006738_030--Hb_006738_020 Hb_000318_160--Hb_003349_080 Hb_000318_160--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_000318_160--Hb_068056_030 Hb_000318_160--Hb_000445_490 Hb_000975_230 Hb_000975_230 Hb_003777_040--Hb_000975_230 Hb_003777_040--Hb_000445_490 Hb_011377_020 Hb_011377_020 Hb_003777_040--Hb_011377_020 Hb_103118_020 Hb_103118_020 Hb_003777_040--Hb_103118_020 Hb_002809_150 Hb_002809_150 Hb_003777_040--Hb_002809_150 Hb_001307_210 Hb_001307_210 Hb_003777_040--Hb_001307_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.195633 0.385106 0.465114 0.526492 0.0658381 0.415917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83983 3.01082 1.00245 0.504839 1.76732

CAGE analysis