Hb_002809_150

Information

Type transcription factor
Description TF Family: M-type
Location Contig2809: 108554-111750
Sequence    

Annotation

kegg
ID cic:CICLE_v10023160mg
description hypothetical protein
nr
ID KDO63620.1
description hypothetical protein CISIN_1g0283632mg, partial [Citrus sinensis]
swissprot
ID Q9XJ60
description MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1
trembl
ID A0A067FK99
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0283632mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29331: 89293-111587 , PASA_asmbl_29332: 89293-111591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002809_150 0.0 transcription factor TF Family: M-type hypothetical protein CISIN_1g0283632mg, partial [Citrus sinensis]
2 Hb_003777_040 0.1393050391 - - PREDICTED: sm-like protein LSM3A [Jatropha curcas]
3 Hb_000429_090 0.1547208989 - - PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]
4 Hb_000975_230 0.1616462986 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
5 Hb_010402_050 0.1717954382 - - -
6 Hb_002518_290 0.179627914 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
7 Hb_001493_120 0.1805356711 - - -
8 Hb_000530_120 0.1812678997 - - copper transport protein ATOX1 [Hevea brasiliensis]
9 Hb_091194_010 0.1817803023 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
10 Hb_001195_490 0.1847951494 - - hypothetical protein glysoja_018593 [Glycine soja]
11 Hb_000445_490 0.1876001423 - - -
12 Hb_001136_060 0.1881477451 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
13 Hb_003777_210 0.1887109349 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
14 Hb_003849_270 0.190981059 - - -
15 Hb_027751_060 0.1928871189 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
16 Hb_000976_250 0.196848779 - - -
17 Hb_000834_030 0.1996596552 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
18 Hb_000705_290 0.1997391806 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
19 Hb_000635_210 0.2011651371 - - unknown [Populus trichocarpa]
20 Hb_000928_130 0.2014630821 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002809_150 Hb_002809_150 Hb_003777_040 Hb_003777_040 Hb_002809_150--Hb_003777_040 Hb_000429_090 Hb_000429_090 Hb_002809_150--Hb_000429_090 Hb_000975_230 Hb_000975_230 Hb_002809_150--Hb_000975_230 Hb_010402_050 Hb_010402_050 Hb_002809_150--Hb_010402_050 Hb_002518_290 Hb_002518_290 Hb_002809_150--Hb_002518_290 Hb_001493_120 Hb_001493_120 Hb_002809_150--Hb_001493_120 Hb_003777_040--Hb_000975_230 Hb_000445_490 Hb_000445_490 Hb_003777_040--Hb_000445_490 Hb_011377_020 Hb_011377_020 Hb_003777_040--Hb_011377_020 Hb_103118_020 Hb_103118_020 Hb_003777_040--Hb_103118_020 Hb_001307_210 Hb_001307_210 Hb_003777_040--Hb_001307_210 Hb_091194_010 Hb_091194_010 Hb_000429_090--Hb_091194_010 Hb_000429_090--Hb_001493_120 Hb_000530_120 Hb_000530_120 Hb_000429_090--Hb_000530_120 Hb_003849_270 Hb_003849_270 Hb_000429_090--Hb_003849_270 Hb_001136_060 Hb_001136_060 Hb_000429_090--Hb_001136_060 Hb_000975_230--Hb_000445_490 Hb_000049_050 Hb_000049_050 Hb_000975_230--Hb_000049_050 Hb_000030_200 Hb_000030_200 Hb_000975_230--Hb_000030_200 Hb_000260_790 Hb_000260_790 Hb_000975_230--Hb_000260_790 Hb_000834_030 Hb_000834_030 Hb_000975_230--Hb_000834_030 Hb_003581_220 Hb_003581_220 Hb_010402_050--Hb_003581_220 Hb_050806_010 Hb_050806_010 Hb_010402_050--Hb_050806_010 Hb_152910_020 Hb_152910_020 Hb_010402_050--Hb_152910_020 Hb_001172_100 Hb_001172_100 Hb_010402_050--Hb_001172_100 Hb_032969_030 Hb_032969_030 Hb_010402_050--Hb_032969_030 Hb_000318_160 Hb_000318_160 Hb_010402_050--Hb_000318_160 Hb_062135_020 Hb_062135_020 Hb_002518_290--Hb_062135_020 Hb_000976_250 Hb_000976_250 Hb_002518_290--Hb_000976_250 Hb_012539_020 Hb_012539_020 Hb_002518_290--Hb_012539_020 Hb_005914_200 Hb_005914_200 Hb_002518_290--Hb_005914_200 Hb_000236_150 Hb_000236_150 Hb_002518_290--Hb_000236_150 Hb_003086_060 Hb_003086_060 Hb_002518_290--Hb_003086_060 Hb_000574_460 Hb_000574_460 Hb_001493_120--Hb_000574_460 Hb_001493_120--Hb_091194_010 Hb_001493_120--Hb_001136_060 Hb_001284_010 Hb_001284_010 Hb_001493_120--Hb_001284_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.230501 0.252955 0.395916 3.47438 0.561611 3.07769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.172 13.1824 7.84333 1.54589 7.14096

CAGE analysis