Hb_001493_120

Information

Type -
Description -
Location Contig1493: 78538-79538
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_120 0.0 - - -
2 Hb_000574_460 0.1418113944 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
3 Hb_000429_090 0.1583232395 - - PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]
4 Hb_002809_150 0.1805356711 transcription factor TF Family: M-type hypothetical protein CISIN_1g0283632mg, partial [Citrus sinensis]
5 Hb_091194_010 0.1984501899 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
6 Hb_001136_060 0.2008837449 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
7 Hb_001284_010 0.2046669514 - - hypothetical protein CISIN_1g0279981mg, partial [Citrus sinensis]
8 Hb_003777_040 0.2055571064 - - PREDICTED: sm-like protein LSM3A [Jatropha curcas]
9 Hb_001366_070 0.2095462964 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 4-like isoform X2 [Jatropha curcas]
10 Hb_003849_270 0.2096083722 - - -
11 Hb_006738_020 0.214301745 - - hypothetical protein VITISV_010510 [Vitis vinifera]
12 Hb_042202_050 0.2183250912 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
13 Hb_000975_230 0.2286813659 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
14 Hb_000445_490 0.2300577953 - - -
15 Hb_000056_070 0.2357667074 - - -
16 Hb_000530_120 0.2369241882 - - copper transport protein ATOX1 [Hevea brasiliensis]
17 Hb_000010_260 0.2385026327 - - PREDICTED: uncharacterized protein LOC105640273 [Jatropha curcas]
18 Hb_000052_020 0.2406166352 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
19 Hb_001153_020 0.2410995031 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
20 Hb_000705_290 0.2416244014 - - C-4 methyl sterol oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001493_120 Hb_001493_120 Hb_000574_460 Hb_000574_460 Hb_001493_120--Hb_000574_460 Hb_000429_090 Hb_000429_090 Hb_001493_120--Hb_000429_090 Hb_002809_150 Hb_002809_150 Hb_001493_120--Hb_002809_150 Hb_091194_010 Hb_091194_010 Hb_001493_120--Hb_091194_010 Hb_001136_060 Hb_001136_060 Hb_001493_120--Hb_001136_060 Hb_001284_010 Hb_001284_010 Hb_001493_120--Hb_001284_010 Hb_073490_020 Hb_073490_020 Hb_000574_460--Hb_073490_020 Hb_001490_030 Hb_001490_030 Hb_000574_460--Hb_001490_030 Hb_000574_460--Hb_091194_010 Hb_006738_020 Hb_006738_020 Hb_000574_460--Hb_006738_020 Hb_000574_460--Hb_000429_090 Hb_000429_090--Hb_091194_010 Hb_000429_090--Hb_002809_150 Hb_000530_120 Hb_000530_120 Hb_000429_090--Hb_000530_120 Hb_003849_270 Hb_003849_270 Hb_000429_090--Hb_003849_270 Hb_000429_090--Hb_001136_060 Hb_003777_040 Hb_003777_040 Hb_002809_150--Hb_003777_040 Hb_000975_230 Hb_000975_230 Hb_002809_150--Hb_000975_230 Hb_010402_050 Hb_010402_050 Hb_002809_150--Hb_010402_050 Hb_002518_290 Hb_002518_290 Hb_002809_150--Hb_002518_290 Hb_000429_100 Hb_000429_100 Hb_091194_010--Hb_000429_100 Hb_000169_140 Hb_000169_140 Hb_091194_010--Hb_000169_140 Hb_091194_010--Hb_001136_060 Hb_091194_010--Hb_002809_150 Hb_000705_290 Hb_000705_290 Hb_091194_010--Hb_000705_290 Hb_000042_200 Hb_000042_200 Hb_001136_060--Hb_000042_200 Hb_000834_030 Hb_000834_030 Hb_001136_060--Hb_000834_030 Hb_000445_490 Hb_000445_490 Hb_001136_060--Hb_000445_490 Hb_001136_060--Hb_000705_290 Hb_033153_060 Hb_033153_060 Hb_001136_060--Hb_033153_060 Hb_003349_080 Hb_003349_080 Hb_001136_060--Hb_003349_080 Hb_042202_050 Hb_042202_050 Hb_001284_010--Hb_042202_050 Hb_019113_020 Hb_019113_020 Hb_001284_010--Hb_019113_020 Hb_003050_250 Hb_003050_250 Hb_001284_010--Hb_003050_250 Hb_000337_050 Hb_000337_050 Hb_001284_010--Hb_000337_050 Hb_000052_020 Hb_000052_020 Hb_001284_010--Hb_000052_020 Hb_001953_080 Hb_001953_080 Hb_001284_010--Hb_001953_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.252905 0.488521 0.16039 0.426312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.25061 2.06237 0.952248 0.753016 2.0932

CAGE analysis