Hb_001490_030

Information

Type -
Description -
Location Contig1490: 73115-74379
Sequence    

Annotation

kegg
ID rcu:RCOM_1105760
description Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative
nr
ID XP_012084507.1
description PREDICTED: psbP domain-containing protein 6, chloroplastic [Jatropha curcas]
swissprot
ID Q9LXX5
description PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 PE=1 SV=1
trembl
ID A0A067JU83
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20139 PE=4 SV=1
Gene Ontology
ID GO:0009543
description psbp domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12396: 52302-74068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001490_030 0.0 - - PREDICTED: psbP domain-containing protein 6, chloroplastic [Jatropha curcas]
2 Hb_003813_020 0.1546803607 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
3 Hb_000622_240 0.1587713551 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
4 Hb_001712_020 0.1703220496 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
5 Hb_000107_570 0.1770989002 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
6 Hb_004241_020 0.1775889126 - - PREDICTED: DAG protein, chloroplastic-like [Jatropha curcas]
7 Hb_000156_210 0.1831821902 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
8 Hb_000429_100 0.1833124303 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
9 Hb_005846_030 0.1843578937 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
10 Hb_067069_010 0.1844763568 - - hypothetical protein JCGZ_11524 [Jatropha curcas]
11 Hb_011689_120 0.1854331974 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
12 Hb_001240_010 0.1866740274 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
13 Hb_012627_040 0.1889233617 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
14 Hb_000162_120 0.1891911861 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
15 Hb_000028_110 0.1894353961 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
16 Hb_003849_270 0.1906337747 - - -
17 Hb_007534_050 0.1909537545 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000661_080 0.1914877711 - - monoxygenase, putative [Ricinus communis]
19 Hb_000574_460 0.1916330025 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
20 Hb_001790_030 0.1916814493 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001490_030 Hb_001490_030 Hb_003813_020 Hb_003813_020 Hb_001490_030--Hb_003813_020 Hb_000622_240 Hb_000622_240 Hb_001490_030--Hb_000622_240 Hb_001712_020 Hb_001712_020 Hb_001490_030--Hb_001712_020 Hb_000107_570 Hb_000107_570 Hb_001490_030--Hb_000107_570 Hb_004241_020 Hb_004241_020 Hb_001490_030--Hb_004241_020 Hb_000156_210 Hb_000156_210 Hb_001490_030--Hb_000156_210 Hb_001790_030 Hb_001790_030 Hb_003813_020--Hb_001790_030 Hb_007534_050 Hb_007534_050 Hb_003813_020--Hb_007534_050 Hb_000112_060 Hb_000112_060 Hb_003813_020--Hb_000112_060 Hb_000164_140 Hb_000164_140 Hb_003813_020--Hb_000164_140 Hb_001946_160 Hb_001946_160 Hb_003813_020--Hb_001946_160 Hb_158845_050 Hb_158845_050 Hb_003813_020--Hb_158845_050 Hb_000622_240--Hb_000107_570 Hb_000028_110 Hb_000028_110 Hb_000622_240--Hb_000028_110 Hb_005846_030 Hb_005846_030 Hb_000622_240--Hb_005846_030 Hb_000638_160 Hb_000638_160 Hb_000622_240--Hb_000638_160 Hb_001435_020 Hb_001435_020 Hb_000622_240--Hb_001435_020 Hb_000622_240--Hb_000164_140 Hb_000877_080 Hb_000877_080 Hb_001712_020--Hb_000877_080 Hb_001712_020--Hb_005846_030 Hb_011689_120 Hb_011689_120 Hb_001712_020--Hb_011689_120 Hb_006846_150 Hb_006846_150 Hb_001712_020--Hb_006846_150 Hb_014834_130 Hb_014834_130 Hb_001712_020--Hb_014834_130 Hb_000317_260 Hb_000317_260 Hb_001712_020--Hb_000317_260 Hb_000107_570--Hb_000028_110 Hb_000462_090 Hb_000462_090 Hb_000107_570--Hb_000462_090 Hb_003666_030 Hb_003666_030 Hb_000107_570--Hb_003666_030 Hb_000702_080 Hb_000702_080 Hb_000107_570--Hb_000702_080 Hb_006117_040 Hb_006117_040 Hb_000107_570--Hb_006117_040 Hb_000297_150 Hb_000297_150 Hb_004241_020--Hb_000297_150 Hb_004241_020--Hb_000702_080 Hb_000173_250 Hb_000173_250 Hb_004241_020--Hb_000173_250 Hb_000580_150 Hb_000580_150 Hb_004241_020--Hb_000580_150 Hb_000465_190 Hb_000465_190 Hb_004241_020--Hb_000465_190 Hb_009775_010 Hb_009775_010 Hb_004241_020--Hb_009775_010 Hb_007632_170 Hb_007632_170 Hb_000156_210--Hb_007632_170 Hb_019040_030 Hb_019040_030 Hb_000156_210--Hb_019040_030 Hb_000191_080 Hb_000191_080 Hb_000156_210--Hb_000191_080 Hb_000156_210--Hb_005846_030 Hb_008698_010 Hb_008698_010 Hb_000156_210--Hb_008698_010 Hb_002078_300 Hb_002078_300 Hb_000156_210--Hb_002078_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.98975 4.55378 11.8172 6.49341 0.983681 15.2764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.232 29.3993 9.17028 8.68815 42.9074

CAGE analysis