Hb_000530_120

Information

Type -
Description -
Location Contig530: 187899-190028
Sequence    

Annotation

kegg
ID pop:POPTR_0010s24290g
description POPTRDRAFT_228799; hypothetical protein
nr
ID ADD69807.1
description copper transport protein ATOX1 [Hevea brasiliensis]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID D4P094
description Copper transport protein ATOX1 OS=Hevea brasiliensis GN=CCH PE=2 SV=1
Gene Ontology
ID GO:0009507
description copper transport protein atox1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47320: 188071-189903 , PASA_asmbl_47321: 189373-189654
cDNA
(Sanger)
(ID:Location)		 028_B02.ab1: 188171-189901 , 040_K15.ab1: 188088-189898 , 049_D08.ab1: 188089-189903

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000530_120 0.0 - - copper transport protein ATOX1 [Hevea brasiliensis]
2 Hb_003849_270 0.1361152272 - - -
3 Hb_000318_160 0.137075953 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
4 Hb_000445_490 0.1496486707 - - -
5 Hb_010402_050 0.1543270115 - - -
6 Hb_003050_280 0.1582611548 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
7 Hb_000270_610 0.1583960833 - - PREDICTED: uncharacterized protein At5g50100, mitochondrial [Jatropha curcas]
8 Hb_001136_060 0.1601554295 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
9 Hb_003349_080 0.1616349903 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
10 Hb_000320_180 0.1622430107 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
11 Hb_002936_080 0.1648568379 - - Protein bem46, putative [Ricinus communis]
12 Hb_000429_090 0.1652398971 - - PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]
13 Hb_000928_130 0.1657941699 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_000169_140 0.1678361506 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
15 Hb_024714_050 0.1678432783 - - hypothetical protein CICLE_v100188992mg, partial [Citrus clementina]
16 Hb_000210_220 0.1680924231 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
17 Hb_002802_020 0.1715233116 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
18 Hb_000042_200 0.1718345423 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
19 Hb_001823_060 0.1720672542 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
20 Hb_000705_290 0.1736152509 - - C-4 methyl sterol oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000530_120 Hb_000530_120 Hb_003849_270 Hb_003849_270 Hb_000530_120--Hb_003849_270 Hb_000318_160 Hb_000318_160 Hb_000530_120--Hb_000318_160 Hb_000445_490 Hb_000445_490 Hb_000530_120--Hb_000445_490 Hb_010402_050 Hb_010402_050 Hb_000530_120--Hb_010402_050 Hb_003050_280 Hb_003050_280 Hb_000530_120--Hb_003050_280 Hb_000270_610 Hb_000270_610 Hb_000530_120--Hb_000270_610 Hb_000928_130 Hb_000928_130 Hb_003849_270--Hb_000928_130 Hb_003849_270--Hb_003050_280 Hb_006738_030 Hb_006738_030 Hb_003849_270--Hb_006738_030 Hb_003849_270--Hb_000318_160 Hb_003777_040 Hb_003777_040 Hb_003849_270--Hb_003777_040 Hb_003349_080 Hb_003349_080 Hb_000318_160--Hb_003349_080 Hb_000318_160--Hb_003050_280 Hb_000224_140 Hb_000224_140 Hb_000318_160--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_000318_160--Hb_068056_030 Hb_000318_160--Hb_000928_130 Hb_000318_160--Hb_000445_490 Hb_002391_220 Hb_002391_220 Hb_000445_490--Hb_002391_220 Hb_000445_490--Hb_000928_130 Hb_001240_020 Hb_001240_020 Hb_000445_490--Hb_001240_020 Hb_000975_230 Hb_000975_230 Hb_000445_490--Hb_000975_230 Hb_000445_490--Hb_000224_140 Hb_003581_220 Hb_003581_220 Hb_010402_050--Hb_003581_220 Hb_050806_010 Hb_050806_010 Hb_010402_050--Hb_050806_010 Hb_152910_020 Hb_152910_020 Hb_010402_050--Hb_152910_020 Hb_001172_100 Hb_001172_100 Hb_010402_050--Hb_001172_100 Hb_032969_030 Hb_032969_030 Hb_010402_050--Hb_032969_030 Hb_010402_050--Hb_000318_160 Hb_004125_040 Hb_004125_040 Hb_003050_280--Hb_004125_040 Hb_003050_280--Hb_003349_080 Hb_003050_280--Hb_000224_140 Hb_002872_050 Hb_002872_050 Hb_003050_280--Hb_002872_050 Hb_007576_170 Hb_007576_170 Hb_003050_280--Hb_007576_170 Hb_000111_100 Hb_000111_100 Hb_000270_610--Hb_000111_100 Hb_000270_610--Hb_002391_220 Hb_000270_610--Hb_000445_490 Hb_000260_200 Hb_000260_200 Hb_000270_610--Hb_000260_200 Hb_000599_280 Hb_000599_280 Hb_000270_610--Hb_000599_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
137.989 72.0941 112.653 208.647 83.0981 87.9225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
717.911 975.174 430.721 59.0498 587.182

CAGE analysis