Hb_000529_220

Information

Type -
Description -
Location Contig529: 292828-296037
Sequence    

Annotation

kegg
ID rcu:RCOM_0320400
description hypothetical protein
nr
ID XP_002534923.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T9K4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0320400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47255: 292880-296016
cDNA
(Sanger)
(ID:Location)		 026_I06.ab1: 294037-295959

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000169_140 0.1398358313 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
3 Hb_000272_140 0.1466825105 - - Protein bem46, putative [Ricinus communis]
4 Hb_000672_120 0.1468531571 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
5 Hb_008544_010 0.1486672622 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
6 Hb_162275_030 0.1517358677 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
7 Hb_000329_180 0.1520083116 - - Auxin-induced protein X10A, putative [Ricinus communis]
8 Hb_002878_010 0.1523716437 - - -
9 Hb_011457_090 0.1539936703 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
10 Hb_138585_050 0.1552333964 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
11 Hb_010582_010 0.1555930056 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
12 Hb_000210_220 0.1562318414 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
13 Hb_004336_050 0.1564597154 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
14 Hb_003663_070 0.1567893055 - - -
15 Hb_002214_050 0.1572610031 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
16 Hb_000364_020 0.1594401553 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
17 Hb_001437_220 0.1598137804 - - Transmembrane protein, putative [Ricinus communis]
18 Hb_000907_090 0.1601478978 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000300_220 0.1605814468 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
20 Hb_002016_100 0.1613763015 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]

Gene co-expression network

sample Hb_000529_220 Hb_000529_220 Hb_000169_140 Hb_000169_140 Hb_000529_220--Hb_000169_140 Hb_000272_140 Hb_000272_140 Hb_000529_220--Hb_000272_140 Hb_000672_120 Hb_000672_120 Hb_000529_220--Hb_000672_120 Hb_008544_010 Hb_008544_010 Hb_000529_220--Hb_008544_010 Hb_162275_030 Hb_162275_030 Hb_000529_220--Hb_162275_030 Hb_000329_180 Hb_000329_180 Hb_000529_220--Hb_000329_180 Hb_000210_220 Hb_000210_220 Hb_000169_140--Hb_000210_220 Hb_003349_080 Hb_003349_080 Hb_000169_140--Hb_003349_080 Hb_000997_360 Hb_000997_360 Hb_000169_140--Hb_000997_360 Hb_028487_030 Hb_028487_030 Hb_000169_140--Hb_028487_030 Hb_002260_030 Hb_002260_030 Hb_000169_140--Hb_002260_030 Hb_002878_010 Hb_002878_010 Hb_000272_140--Hb_002878_010 Hb_002918_290 Hb_002918_290 Hb_000272_140--Hb_002918_290 Hb_000705_290 Hb_000705_290 Hb_000272_140--Hb_000705_290 Hb_001953_090 Hb_001953_090 Hb_000272_140--Hb_001953_090 Hb_000042_200 Hb_000042_200 Hb_000272_140--Hb_000042_200 Hb_000322_140 Hb_000322_140 Hb_000272_140--Hb_000322_140 Hb_004336_050 Hb_004336_050 Hb_000672_120--Hb_004336_050 Hb_007594_090 Hb_007594_090 Hb_000672_120--Hb_007594_090 Hb_172706_030 Hb_172706_030 Hb_000672_120--Hb_172706_030 Hb_005588_070 Hb_005588_070 Hb_000672_120--Hb_005588_070 Hb_000224_120 Hb_000224_120 Hb_000672_120--Hb_000224_120 Hb_001307_090 Hb_001307_090 Hb_000672_120--Hb_001307_090 Hb_004374_140 Hb_004374_140 Hb_008544_010--Hb_004374_140 Hb_001461_010 Hb_001461_010 Hb_008544_010--Hb_001461_010 Hb_000172_030 Hb_000172_030 Hb_008544_010--Hb_000172_030 Hb_008544_010--Hb_004336_050 Hb_001191_090 Hb_001191_090 Hb_008544_010--Hb_001191_090 Hb_000046_290 Hb_000046_290 Hb_008544_010--Hb_000046_290 Hb_001006_180 Hb_001006_180 Hb_162275_030--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_162275_030--Hb_001762_060 Hb_002735_060 Hb_002735_060 Hb_162275_030--Hb_002735_060 Hb_002119_120 Hb_002119_120 Hb_162275_030--Hb_002119_120 Hb_007382_150 Hb_007382_150 Hb_162275_030--Hb_007382_150 Hb_000069_550 Hb_000069_550 Hb_162275_030--Hb_000069_550 Hb_000125_030 Hb_000125_030 Hb_000329_180--Hb_000125_030 Hb_000260_210 Hb_000260_210 Hb_000329_180--Hb_000260_210 Hb_003207_170 Hb_003207_170 Hb_000329_180--Hb_003207_170 Hb_000061_300 Hb_000061_300 Hb_000329_180--Hb_000061_300 Hb_061802_010 Hb_061802_010 Hb_000329_180--Hb_061802_010 Hb_001575_020 Hb_001575_020 Hb_000329_180--Hb_001575_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.5698 8.2695 6.68732 39.1329 13.211 66.6635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
147.135 102.041 86.3942 12.0415 55.0215

CAGE analysis