Hb_000270_740

Information

Type -
Description -
Location Contig270: 607357-609319
Sequence    

Annotation

kegg
ID rcu:RCOM_1511830
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012080105.1
description PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
swissprot
ID O48788
description Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1
trembl
ID A0A067KFU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11506 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable inactive receptor kinase at2g26730

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28273: 602515-606597
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_740 0.0 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
2 Hb_007441_240 0.1386061001 - - ethphon-induced protein [Hevea brasiliensis]
3 Hb_004787_040 0.1547649498 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000739_140 0.1651819308 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
5 Hb_000768_130 0.1695126954 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
6 Hb_158104_020 0.1715894691 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
7 Hb_000382_020 0.1724414813 - - PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]
8 Hb_009075_010 0.1752466498 - - 60S ribosomal protein L10B [Hevea brasiliensis]
9 Hb_002900_130 0.1757575576 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
10 Hb_020805_060 0.1776022505 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
11 Hb_001059_120 0.177681902 - - NADH dehydrogenase, putative [Ricinus communis]
12 Hb_000465_510 0.1780903345 - - PREDICTED: GTP-binding protein YPTM2 [Populus euphratica]
13 Hb_000771_060 0.178646973 - - PREDICTED: spermine synthase [Jatropha curcas]
14 Hb_000031_080 0.1824854458 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
15 Hb_008226_080 0.1868135277 - - Protein LRP16, putative [Ricinus communis]
16 Hb_005054_260 0.1876074671 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
17 Hb_000120_150 0.1887410986 - - hypothetical protein JCGZ_08453 [Jatropha curcas]
18 Hb_001675_030 0.188896237 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001410_060 0.1895217576 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
20 Hb_000163_050 0.1907872227 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]

Gene co-expression network

sample Hb_000270_740 Hb_000270_740 Hb_007441_240 Hb_007441_240 Hb_000270_740--Hb_007441_240 Hb_004787_040 Hb_004787_040 Hb_000270_740--Hb_004787_040 Hb_000739_140 Hb_000739_140 Hb_000270_740--Hb_000739_140 Hb_000768_130 Hb_000768_130 Hb_000270_740--Hb_000768_130 Hb_158104_020 Hb_158104_020 Hb_000270_740--Hb_158104_020 Hb_000382_020 Hb_000382_020 Hb_000270_740--Hb_000382_020 Hb_000110_120 Hb_000110_120 Hb_007441_240--Hb_000110_120 Hb_000077_180 Hb_000077_180 Hb_007441_240--Hb_000077_180 Hb_007441_240--Hb_000739_140 Hb_000317_420 Hb_000317_420 Hb_007441_240--Hb_000317_420 Hb_028049_010 Hb_028049_010 Hb_007441_240--Hb_028049_010 Hb_000771_060 Hb_000771_060 Hb_007441_240--Hb_000771_060 Hb_002309_050 Hb_002309_050 Hb_004787_040--Hb_002309_050 Hb_170426_010 Hb_170426_010 Hb_004787_040--Hb_170426_010 Hb_020805_060 Hb_020805_060 Hb_004787_040--Hb_020805_060 Hb_004679_060 Hb_004679_060 Hb_004787_040--Hb_004679_060 Hb_000189_540 Hb_000189_540 Hb_004787_040--Hb_000189_540 Hb_009075_010 Hb_009075_010 Hb_000739_140--Hb_009075_010 Hb_005054_260 Hb_005054_260 Hb_000739_140--Hb_005054_260 Hb_005306_070 Hb_005306_070 Hb_000739_140--Hb_005306_070 Hb_000739_140--Hb_000768_130 Hb_001053_140 Hb_001053_140 Hb_000739_140--Hb_001053_140 Hb_001410_060 Hb_001410_060 Hb_000739_140--Hb_001410_060 Hb_007313_080 Hb_007313_080 Hb_000768_130--Hb_007313_080 Hb_154141_030 Hb_154141_030 Hb_000768_130--Hb_154141_030 Hb_000215_330 Hb_000215_330 Hb_000768_130--Hb_000215_330 Hb_003020_330 Hb_003020_330 Hb_000768_130--Hb_003020_330 Hb_000768_130--Hb_005306_070 Hb_158104_020--Hb_000317_420 Hb_158104_020--Hb_007441_240 Hb_000407_070 Hb_000407_070 Hb_158104_020--Hb_000407_070 Hb_158104_020--Hb_028049_010 Hb_000723_170 Hb_000723_170 Hb_158104_020--Hb_000723_170 Hb_000382_020--Hb_000771_060 Hb_002249_070 Hb_002249_070 Hb_000382_020--Hb_002249_070 Hb_000382_020--Hb_028049_010 Hb_001242_050 Hb_001242_050 Hb_000382_020--Hb_001242_050 Hb_000382_020--Hb_007441_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0131619 0.0630946 0.0808939 0.217291 0 0.0102771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.144721 0.341605 0.107785 0.143541 0.0400345

CAGE analysis