Hb_004679_060

Information

Type -
Description -
Location Contig4679: 77966-79090
Sequence    

Annotation

kegg
ID rcu:RCOM_1108230
description hypothetical protein
nr
ID XP_002531502.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZT3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1108230 PE=4 SV=1
Gene Ontology
ID GO:0005886
description cysteine-rich and transmembrane domain-containing protein a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44154: 78043-79042 , PASA_asmbl_44155: 78338-79039
cDNA
(Sanger)
(ID:Location)		 023_O06.ab1: 78338-78893

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004679_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_170426_010 0.1256804833 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
3 Hb_001449_100 0.1561837816 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
4 Hb_007313_080 0.1596492543 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
5 Hb_000189_540 0.1651885827 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
6 Hb_020805_060 0.1677877875 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
7 Hb_004787_040 0.1698430448 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001059_120 0.1744138015 - - NADH dehydrogenase, putative [Ricinus communis]
9 Hb_004089_020 0.1813895574 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
10 Hb_000768_130 0.1865521233 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
11 Hb_009075_010 0.1871491017 - - 60S ribosomal protein L10B [Hevea brasiliensis]
12 Hb_098533_020 0.1896363671 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
13 Hb_002260_010 0.1932524029 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
14 Hb_028271_020 0.1939824057 - - acyl-CoA oxidase, putative [Ricinus communis]
15 Hb_003540_200 0.1944065318 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
16 Hb_002686_180 0.1944161031 - - PREDICTED: early nodulin-93-like [Populus euphratica]
17 Hb_000739_140 0.1960036919 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
18 Hb_147752_010 0.1975784718 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
19 Hb_027472_160 0.1986596052 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
20 Hb_003020_150 0.2009488351 - - tropinone reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004679_060 Hb_004679_060 Hb_170426_010 Hb_170426_010 Hb_004679_060--Hb_170426_010 Hb_001449_100 Hb_001449_100 Hb_004679_060--Hb_001449_100 Hb_007313_080 Hb_007313_080 Hb_004679_060--Hb_007313_080 Hb_000189_540 Hb_000189_540 Hb_004679_060--Hb_000189_540 Hb_020805_060 Hb_020805_060 Hb_004679_060--Hb_020805_060 Hb_004787_040 Hb_004787_040 Hb_004679_060--Hb_004787_040 Hb_004089_020 Hb_004089_020 Hb_170426_010--Hb_004089_020 Hb_170426_010--Hb_004787_040 Hb_170426_010--Hb_020805_060 Hb_170426_010--Hb_000189_540 Hb_000011_300 Hb_000011_300 Hb_170426_010--Hb_000011_300 Hb_028271_020 Hb_028271_020 Hb_001449_100--Hb_028271_020 Hb_002784_100 Hb_002784_100 Hb_001449_100--Hb_002784_100 Hb_011609_110 Hb_011609_110 Hb_001449_100--Hb_011609_110 Hb_003398_020 Hb_003398_020 Hb_001449_100--Hb_003398_020 Hb_007017_010 Hb_007017_010 Hb_001449_100--Hb_007017_010 Hb_000768_130 Hb_000768_130 Hb_007313_080--Hb_000768_130 Hb_003020_330 Hb_003020_330 Hb_007313_080--Hb_003020_330 Hb_000454_180 Hb_000454_180 Hb_007313_080--Hb_000454_180 Hb_002900_130 Hb_002900_130 Hb_007313_080--Hb_002900_130 Hb_154141_030 Hb_154141_030 Hb_007313_080--Hb_154141_030 Hb_027472_160 Hb_027472_160 Hb_007313_080--Hb_027472_160 Hb_001322_070 Hb_001322_070 Hb_000189_540--Hb_001322_070 Hb_002686_180 Hb_002686_180 Hb_000189_540--Hb_002686_180 Hb_098315_020 Hb_098315_020 Hb_000189_540--Hb_098315_020 Hb_000189_540--Hb_020805_060 Hb_000155_090 Hb_000155_090 Hb_000189_540--Hb_000155_090 Hb_000152_210 Hb_000152_210 Hb_000189_540--Hb_000152_210 Hb_000768_140 Hb_000768_140 Hb_020805_060--Hb_000768_140 Hb_001164_030 Hb_001164_030 Hb_020805_060--Hb_001164_030 Hb_020805_060--Hb_000011_300 Hb_020805_060--Hb_004787_040 Hb_002309_050 Hb_002309_050 Hb_004787_040--Hb_002309_050 Hb_000270_740 Hb_000270_740 Hb_004787_040--Hb_000270_740 Hb_004787_040--Hb_000189_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.386957 2.61993 7.53872 4.29409 0.724399 0.273884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.55985 22.5838 4.13178 5.3771 1.80835

CAGE analysis