Hb_000011_300

Information

Type -
Description -
Location Contig11: 341939-344927
Sequence    

Annotation

kegg
ID cam:101493198
description proteasome subunit alpha type-5-like
nr
ID XP_012456843.1
description PREDICTED: proteasome subunit alpha type-5 isoform X1 [Gossypium raimondii]
swissprot
ID Q9M4T8
description Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1
trembl
ID A0A0D2UE68
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G173100 PE=4 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit alpha type-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03004: 342940-344848
cDNA
(Sanger)
(ID:Location)		 044_M17.ab1: 343030-344848

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_300 0.0 - - PREDICTED: proteasome subunit alpha type-5 isoform X1 [Gossypium raimondii]
2 Hb_020805_060 0.1464786816 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
3 Hb_000189_540 0.1581327518 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
4 Hb_170426_010 0.1683040563 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
5 Hb_000291_270 0.169373993 - - hypothetical protein JCGZ_12006 [Jatropha curcas]
6 Hb_004089_020 0.1772842935 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
7 Hb_000005_300 0.1799255458 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000155_090 0.1822194198 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
9 Hb_000768_140 0.186787726 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
10 Hb_000008_400 0.1976650653 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
11 Hb_007441_170 0.1981212595 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
12 Hb_154141_030 0.199321239 - - PREDICTED: histone H2AX [Populus euphratica]
13 Hb_000739_140 0.200427796 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
14 Hb_001016_080 0.2033132359 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
15 Hb_001823_060 0.205229165 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
16 Hb_001450_030 0.2074127603 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
17 Hb_012022_140 0.2076233984 - - ADP,ATP carrier protein, putative [Ricinus communis]
18 Hb_001252_220 0.207929736 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
19 Hb_004108_110 0.2081851548 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002900_130 0.212921584 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_000011_300 Hb_000011_300 Hb_020805_060 Hb_020805_060 Hb_000011_300--Hb_020805_060 Hb_000189_540 Hb_000189_540 Hb_000011_300--Hb_000189_540 Hb_170426_010 Hb_170426_010 Hb_000011_300--Hb_170426_010 Hb_000291_270 Hb_000291_270 Hb_000011_300--Hb_000291_270 Hb_004089_020 Hb_004089_020 Hb_000011_300--Hb_004089_020 Hb_000005_300 Hb_000005_300 Hb_000011_300--Hb_000005_300 Hb_000768_140 Hb_000768_140 Hb_020805_060--Hb_000768_140 Hb_001164_030 Hb_001164_030 Hb_020805_060--Hb_001164_030 Hb_020805_060--Hb_000189_540 Hb_020805_060--Hb_170426_010 Hb_004787_040 Hb_004787_040 Hb_020805_060--Hb_004787_040 Hb_001322_070 Hb_001322_070 Hb_000189_540--Hb_001322_070 Hb_002686_180 Hb_002686_180 Hb_000189_540--Hb_002686_180 Hb_098315_020 Hb_098315_020 Hb_000189_540--Hb_098315_020 Hb_000155_090 Hb_000155_090 Hb_000189_540--Hb_000155_090 Hb_000152_210 Hb_000152_210 Hb_000189_540--Hb_000152_210 Hb_004679_060 Hb_004679_060 Hb_170426_010--Hb_004679_060 Hb_170426_010--Hb_004089_020 Hb_170426_010--Hb_004787_040 Hb_170426_010--Hb_000189_540 Hb_003540_200 Hb_003540_200 Hb_000291_270--Hb_003540_200 Hb_154141_030 Hb_154141_030 Hb_000291_270--Hb_154141_030 Hb_000483_090 Hb_000483_090 Hb_000291_270--Hb_000483_090 Hb_003020_330 Hb_003020_330 Hb_000291_270--Hb_003020_330 Hb_001016_080 Hb_001016_080 Hb_000291_270--Hb_001016_080 Hb_025645_030 Hb_025645_030 Hb_000291_270--Hb_025645_030 Hb_012022_140 Hb_012022_140 Hb_004089_020--Hb_012022_140 Hb_000815_290 Hb_000815_290 Hb_004089_020--Hb_000815_290 Hb_000739_140 Hb_000739_140 Hb_004089_020--Hb_000739_140 Hb_005054_260 Hb_005054_260 Hb_004089_020--Hb_005054_260 Hb_004089_020--Hb_000005_300 Hb_001373_060 Hb_001373_060 Hb_000005_300--Hb_001373_060 Hb_000005_300--Hb_012022_140 Hb_001252_220 Hb_001252_220 Hb_000005_300--Hb_001252_220 Hb_001979_020 Hb_001979_020 Hb_000005_300--Hb_001979_020 Hb_000215_330 Hb_000215_330 Hb_000005_300--Hb_000215_330 Hb_000005_300--Hb_000739_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.679624 0.648528 10.9365 12.2647 0.397792 0.484273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.77879 31.088 7.68832 2.24334 7.29218

CAGE analysis