Hb_012022_140

Information

Type -
Description -
Location Contig12022: 189544-195602
Sequence    

Annotation

kegg
ID rcu:RCOM_0643920
description ADP,ATP carrier protein, putative
nr
ID XP_002528101.1
description ADP,ATP carrier protein, putative [Ricinus communis]
swissprot
ID O65023
description Probable envelope ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana GN=EAAC PE=2 SV=2
trembl
ID B9SQ32
description ADP,ATP carrier protein, putative OS=Ricinus communis GN=RCOM_0643920 PE=3 SV=1
Gene Ontology
ID GO:0055085
description probable envelope carrier chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06281: 189617-195533 , PASA_asmbl_06282: 189550-195498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012022_140 0.0 - - ADP,ATP carrier protein, putative [Ricinus communis]
2 Hb_001252_220 0.1016629538 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
3 Hb_000005_300 0.1021400322 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004089_020 0.121417402 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
5 Hb_001373_060 0.124643168 - - PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]
6 Hb_002232_060 0.1339693053 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
7 Hb_000676_310 0.134457491 - - BnaC09g40680D [Brassica napus]
8 Hb_001979_020 0.1360535131 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
9 Hb_002260_010 0.1366856125 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
10 Hb_004057_010 0.1378252566 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
11 Hb_003020_150 0.1418229336 - - tropinone reductase, putative [Ricinus communis]
12 Hb_000289_070 0.1422091382 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006198_070 0.1427595999 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
14 Hb_003633_060 0.1433918859 - - translationally controlled tumor protein [Hevea brasiliensis]
15 Hb_005843_140 0.1443439284 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
16 Hb_001431_080 0.149753997 - - 40S ribosomal protein S11, putative [Ricinus communis]
17 Hb_003929_150 0.1518171913 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
18 Hb_000997_190 0.1519980319 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
19 Hb_006355_040 0.1557578998 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
20 Hb_019762_050 0.1581902063 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_012022_140 Hb_012022_140 Hb_001252_220 Hb_001252_220 Hb_012022_140--Hb_001252_220 Hb_000005_300 Hb_000005_300 Hb_012022_140--Hb_000005_300 Hb_004089_020 Hb_004089_020 Hb_012022_140--Hb_004089_020 Hb_001373_060 Hb_001373_060 Hb_012022_140--Hb_001373_060 Hb_002232_060 Hb_002232_060 Hb_012022_140--Hb_002232_060 Hb_000676_310 Hb_000676_310 Hb_012022_140--Hb_000676_310 Hb_002260_010 Hb_002260_010 Hb_001252_220--Hb_002260_010 Hb_004057_010 Hb_004057_010 Hb_001252_220--Hb_004057_010 Hb_024074_010 Hb_024074_010 Hb_001252_220--Hb_024074_010 Hb_001252_220--Hb_000005_300 Hb_003020_150 Hb_003020_150 Hb_001252_220--Hb_003020_150 Hb_000005_300--Hb_001373_060 Hb_001979_020 Hb_001979_020 Hb_000005_300--Hb_001979_020 Hb_000215_330 Hb_000215_330 Hb_000005_300--Hb_000215_330 Hb_000739_140 Hb_000739_140 Hb_000005_300--Hb_000739_140 Hb_000815_290 Hb_000815_290 Hb_004089_020--Hb_000815_290 Hb_004089_020--Hb_000739_140 Hb_005054_260 Hb_005054_260 Hb_004089_020--Hb_005054_260 Hb_170426_010 Hb_170426_010 Hb_004089_020--Hb_170426_010 Hb_004089_020--Hb_000005_300 Hb_003633_060 Hb_003633_060 Hb_001373_060--Hb_003633_060 Hb_003494_050 Hb_003494_050 Hb_001373_060--Hb_003494_050 Hb_001373_060--Hb_004057_010 Hb_006198_070 Hb_006198_070 Hb_001373_060--Hb_006198_070 Hb_001431_080 Hb_001431_080 Hb_001373_060--Hb_001431_080 Hb_002232_060--Hb_001979_020 Hb_005843_140 Hb_005843_140 Hb_002232_060--Hb_005843_140 Hb_000072_200 Hb_000072_200 Hb_002232_060--Hb_000072_200 Hb_002232_060--Hb_003020_150 Hb_000465_070 Hb_000465_070 Hb_002232_060--Hb_000465_070 Hb_002232_060--Hb_006198_070 Hb_001718_030 Hb_001718_030 Hb_000676_310--Hb_001718_030 Hb_000676_310--Hb_001431_080 Hb_001188_030 Hb_001188_030 Hb_000676_310--Hb_001188_030 Hb_006355_040 Hb_006355_040 Hb_000676_310--Hb_006355_040 Hb_011236_010 Hb_011236_010 Hb_000676_310--Hb_011236_010 Hb_132840_140 Hb_132840_140 Hb_000676_310--Hb_132840_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.17257 4.25689 12.2936 6.96419 2.50903 3.28069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.44018 38.4448 10.8235 5.67157 12.0527

CAGE analysis