Hb_000291_270

Information

Type -
Description -
Location Contig291: 244538-244801
Sequence    

Annotation

kegg
ID rcu:RCOM_1033360
description hypothetical protein
nr
ID KDP32714.1
description hypothetical protein JCGZ_12006 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KLS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12006 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 032_C06.ab1: 244500-244921

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_270 0.0 - - hypothetical protein JCGZ_12006 [Jatropha curcas]
2 Hb_003540_200 0.1163823769 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
3 Hb_154141_030 0.1303832361 - - PREDICTED: histone H2AX [Populus euphratica]
4 Hb_000483_090 0.1356221358 - - -
5 Hb_003020_330 0.1530525933 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
6 Hb_001016_080 0.1599906266 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
7 Hb_025645_030 0.1603657443 - - -
8 Hb_001225_010 0.1609658474 - - unnamed protein product [Coffea canephora]
9 Hb_077399_010 0.1616911197 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
10 Hb_020805_060 0.1629499728 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
11 Hb_002900_130 0.1669404346 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
12 Hb_000011_300 0.169373993 - - PREDICTED: proteasome subunit alpha type-5 isoform X1 [Gossypium raimondii]
13 Hb_000110_170 0.1725343218 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_009778_040 0.1744163772 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
15 Hb_000768_130 0.1744926053 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
16 Hb_001164_030 0.1787849624 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
17 Hb_007313_080 0.1810372381 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
18 Hb_027472_160 0.1817243596 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
19 Hb_116420_020 0.182561039 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
20 Hb_002081_030 0.1840174346 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_000291_270 Hb_000291_270 Hb_003540_200 Hb_003540_200 Hb_000291_270--Hb_003540_200 Hb_154141_030 Hb_154141_030 Hb_000291_270--Hb_154141_030 Hb_000483_090 Hb_000483_090 Hb_000291_270--Hb_000483_090 Hb_003020_330 Hb_003020_330 Hb_000291_270--Hb_003020_330 Hb_001016_080 Hb_001016_080 Hb_000291_270--Hb_001016_080 Hb_025645_030 Hb_025645_030 Hb_000291_270--Hb_025645_030 Hb_000110_170 Hb_000110_170 Hb_003540_200--Hb_000110_170 Hb_003540_200--Hb_003020_330 Hb_001225_010 Hb_001225_010 Hb_003540_200--Hb_001225_010 Hb_012053_010 Hb_012053_010 Hb_003540_200--Hb_012053_010 Hb_003540_200--Hb_154141_030 Hb_000768_130 Hb_000768_130 Hb_154141_030--Hb_000768_130 Hb_002900_130 Hb_002900_130 Hb_154141_030--Hb_002900_130 Hb_154141_030--Hb_003020_330 Hb_007313_080 Hb_007313_080 Hb_154141_030--Hb_007313_080 Hb_002811_090 Hb_002811_090 Hb_154141_030--Hb_002811_090 Hb_002838_030 Hb_002838_030 Hb_154141_030--Hb_002838_030 Hb_004100_090 Hb_004100_090 Hb_000483_090--Hb_004100_090 Hb_003007_010 Hb_003007_010 Hb_000483_090--Hb_003007_010 Hb_000483_090--Hb_003540_200 Hb_020805_060 Hb_020805_060 Hb_000483_090--Hb_020805_060 Hb_001164_030 Hb_001164_030 Hb_000483_090--Hb_001164_030 Hb_003020_330--Hb_002838_030 Hb_003020_330--Hb_007313_080 Hb_007120_090 Hb_007120_090 Hb_003020_330--Hb_007120_090 Hb_011377_020 Hb_011377_020 Hb_003020_330--Hb_011377_020 Hb_003020_330--Hb_000110_170 Hb_027472_160 Hb_027472_160 Hb_003020_330--Hb_027472_160 Hb_000768_140 Hb_000768_140 Hb_001016_080--Hb_000768_140 Hb_001016_080--Hb_002900_130 Hb_001016_080--Hb_020805_060 Hb_001016_080--Hb_000483_090 Hb_001016_080--Hb_154141_030 Hb_023344_050 Hb_023344_050 Hb_025645_030--Hb_023344_050 Hb_004162_180 Hb_004162_180 Hb_025645_030--Hb_004162_180 Hb_025645_030--Hb_001225_010 Hb_025645_030--Hb_000110_170 Hb_001172_100 Hb_001172_100 Hb_025645_030--Hb_001172_100 Hb_006420_030 Hb_006420_030 Hb_025645_030--Hb_006420_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.20215 16.1848 75.235 215.054 15.9691 25.5074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
129.351 561.598 171.567 54.3481 47.0535

CAGE analysis