Hb_001164_030

Information

Type -
Description -
Location Contig1164: 57410-58641
Sequence    

Annotation

kegg
ID rcu:RCOM_1404700
description GMP synthase [glutamine-hydrolyzing] subunit A, putative
nr
ID XP_002528382.1
description GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
swissprot
ID Q12288
description Putative glutamine amidotransferase YLR126C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR126C PE=1 SV=1
trembl
ID B9SQW3
description GMP synthase [glutamine-hydrolyzing] subunit A, putative OS=Ricinus communis GN=RCOM_1404700 PE=4 SV=1
Gene Ontology
ID GO:0003677
description glutamine amidotransferase ylr126c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05086: 57848-58457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001164_030 0.0 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
2 Hb_020805_060 0.1432957228 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
3 Hb_000768_140 0.1553712909 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
4 Hb_000483_090 0.177892021 - - -
5 Hb_000291_270 0.1787849624 - - hypothetical protein JCGZ_12006 [Jatropha curcas]
6 Hb_091889_010 0.187758755 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
7 Hb_000120_150 0.1881949146 - - hypothetical protein JCGZ_08453 [Jatropha curcas]
8 Hb_003540_200 0.1981060077 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
9 Hb_005321_010 0.2001833253 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
10 Hb_004787_040 0.2030155714 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010506_010 0.208064196 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
12 Hb_002243_060 0.2091635486 - - hypothetical protein POPTR_0022s00750g [Populus trichocarpa]
13 Hb_170426_010 0.2161138769 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
14 Hb_001016_080 0.2172738408 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
15 Hb_000011_300 0.2174970081 - - PREDICTED: proteasome subunit alpha type-5 isoform X1 [Gossypium raimondii]
16 Hb_003007_010 0.2186415872 - - PREDICTED: probable peptide/nitrate transporter At3g43790 isoform X1 [Populus euphratica]
17 Hb_001766_030 0.2205756285 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
18 Hb_004162_180 0.2235195761 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000656_410 0.2243742417 - - hypothetical protein POPTR_0003s06410g [Populus trichocarpa]
20 Hb_004100_090 0.2246168653 - - RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001164_030 Hb_001164_030 Hb_020805_060 Hb_020805_060 Hb_001164_030--Hb_020805_060 Hb_000768_140 Hb_000768_140 Hb_001164_030--Hb_000768_140 Hb_000483_090 Hb_000483_090 Hb_001164_030--Hb_000483_090 Hb_000291_270 Hb_000291_270 Hb_001164_030--Hb_000291_270 Hb_091889_010 Hb_091889_010 Hb_001164_030--Hb_091889_010 Hb_000120_150 Hb_000120_150 Hb_001164_030--Hb_000120_150 Hb_020805_060--Hb_000768_140 Hb_000011_300 Hb_000011_300 Hb_020805_060--Hb_000011_300 Hb_000189_540 Hb_000189_540 Hb_020805_060--Hb_000189_540 Hb_170426_010 Hb_170426_010 Hb_020805_060--Hb_170426_010 Hb_004787_040 Hb_004787_040 Hb_020805_060--Hb_004787_040 Hb_001016_080 Hb_001016_080 Hb_000768_140--Hb_001016_080 Hb_002243_060 Hb_002243_060 Hb_000768_140--Hb_002243_060 Hb_000768_140--Hb_000189_540 Hb_000768_140--Hb_000291_270 Hb_000483_090--Hb_000291_270 Hb_004100_090 Hb_004100_090 Hb_000483_090--Hb_004100_090 Hb_003007_010 Hb_003007_010 Hb_000483_090--Hb_003007_010 Hb_003540_200 Hb_003540_200 Hb_000483_090--Hb_003540_200 Hb_000483_090--Hb_020805_060 Hb_000291_270--Hb_003540_200 Hb_154141_030 Hb_154141_030 Hb_000291_270--Hb_154141_030 Hb_003020_330 Hb_003020_330 Hb_000291_270--Hb_003020_330 Hb_000291_270--Hb_001016_080 Hb_025645_030 Hb_025645_030 Hb_000291_270--Hb_025645_030 Hb_010506_010 Hb_010506_010 Hb_091889_010--Hb_010506_010 Hb_091889_010--Hb_000120_150 Hb_000943_060 Hb_000943_060 Hb_091889_010--Hb_000943_060 Hb_002217_460 Hb_002217_460 Hb_091889_010--Hb_002217_460 Hb_011628_020 Hb_011628_020 Hb_091889_010--Hb_011628_020 Hb_000072_340 Hb_000072_340 Hb_000120_150--Hb_000072_340 Hb_000120_150--Hb_010506_010 Hb_000120_150--Hb_004787_040 Hb_000270_740 Hb_000270_740 Hb_000120_150--Hb_000270_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.475152 16.5964 14.1159 34.3493 0.404133 0.019936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.6298 130.178 34.3279 5.47853 12.2444

CAGE analysis