Hb_002217_460

Information

Type -
Description -
Location Contig2217: 410042-410698
Sequence    

Annotation

kegg
ID rcu:RCOM_1000870
description transcription factor, putative
nr
ID XP_012084104.1
description PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
swissprot
ID Q9LSN7
description Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=1 SV=1
trembl
ID A0A067K6P3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19020 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh148-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22958: 409737-410602 , PASA_asmbl_22959: 410615-411226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_460 0.0 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
2 Hb_000002_260 0.1651303632 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000099_070 0.1682995324 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
4 Hb_005321_010 0.1950804313 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
5 Hb_091889_010 0.1984558439 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
6 Hb_001016_080 0.2100089445 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
7 Hb_001449_100 0.2118842183 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
8 Hb_000120_150 0.2119725508 - - hypothetical protein JCGZ_08453 [Jatropha curcas]
9 Hb_002227_010 0.2172993317 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Populus euphratica]
10 Hb_000291_270 0.2190691806 - - hypothetical protein JCGZ_12006 [Jatropha curcas]
11 Hb_000768_140 0.2212619144 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
12 Hb_000622_080 0.2260001834 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
13 Hb_001164_030 0.2271056244 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
14 Hb_028271_020 0.2274898962 - - acyl-CoA oxidase, putative [Ricinus communis]
15 Hb_000116_040 0.2301116211 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
16 Hb_002784_100 0.2304177918 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
17 Hb_003540_200 0.2306836941 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
18 Hb_001766_030 0.2318372874 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
19 Hb_000891_030 0.2324176658 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
20 Hb_001225_010 0.2330668416 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_002217_460 Hb_002217_460 Hb_000002_260 Hb_000002_260 Hb_002217_460--Hb_000002_260 Hb_000099_070 Hb_000099_070 Hb_002217_460--Hb_000099_070 Hb_005321_010 Hb_005321_010 Hb_002217_460--Hb_005321_010 Hb_091889_010 Hb_091889_010 Hb_002217_460--Hb_091889_010 Hb_001016_080 Hb_001016_080 Hb_002217_460--Hb_001016_080 Hb_001449_100 Hb_001449_100 Hb_002217_460--Hb_001449_100 Hb_000002_260--Hb_005321_010 Hb_001766_030 Hb_001766_030 Hb_000002_260--Hb_001766_030 Hb_000002_260--Hb_001016_080 Hb_004108_110 Hb_004108_110 Hb_000002_260--Hb_004108_110 Hb_001225_010 Hb_001225_010 Hb_000002_260--Hb_001225_010 Hb_000116_040 Hb_000116_040 Hb_000099_070--Hb_000116_040 Hb_008772_010 Hb_008772_010 Hb_000099_070--Hb_008772_010 Hb_006006_050 Hb_006006_050 Hb_000099_070--Hb_006006_050 Hb_002235_080 Hb_002235_080 Hb_000099_070--Hb_002235_080 Hb_007017_010 Hb_007017_010 Hb_000099_070--Hb_007017_010 Hb_011236_010 Hb_011236_010 Hb_000099_070--Hb_011236_010 Hb_004100_090 Hb_004100_090 Hb_005321_010--Hb_004100_090 Hb_012053_010 Hb_012053_010 Hb_005321_010--Hb_012053_010 Hb_003540_200 Hb_003540_200 Hb_005321_010--Hb_003540_200 Hb_001164_030 Hb_001164_030 Hb_005321_010--Hb_001164_030 Hb_010506_010 Hb_010506_010 Hb_091889_010--Hb_010506_010 Hb_000120_150 Hb_000120_150 Hb_091889_010--Hb_000120_150 Hb_091889_010--Hb_001164_030 Hb_000943_060 Hb_000943_060 Hb_091889_010--Hb_000943_060 Hb_011628_020 Hb_011628_020 Hb_091889_010--Hb_011628_020 Hb_000768_140 Hb_000768_140 Hb_001016_080--Hb_000768_140 Hb_000291_270 Hb_000291_270 Hb_001016_080--Hb_000291_270 Hb_002900_130 Hb_002900_130 Hb_001016_080--Hb_002900_130 Hb_020805_060 Hb_020805_060 Hb_001016_080--Hb_020805_060 Hb_000483_090 Hb_000483_090 Hb_001016_080--Hb_000483_090 Hb_154141_030 Hb_154141_030 Hb_001016_080--Hb_154141_030 Hb_028271_020 Hb_028271_020 Hb_001449_100--Hb_028271_020 Hb_004679_060 Hb_004679_060 Hb_001449_100--Hb_004679_060 Hb_002784_100 Hb_002784_100 Hb_001449_100--Hb_002784_100 Hb_011609_110 Hb_011609_110 Hb_001449_100--Hb_011609_110 Hb_003398_020 Hb_003398_020 Hb_001449_100--Hb_003398_020 Hb_001449_100--Hb_007017_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.03399 42.816 11.0982 98.3078 12.2452 8.53181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4629 255.699 37.8051 30.9318 25.371

CAGE analysis