Hb_004108_110

Information

Type -
Description -
Location Contig4108: 55933-63521
Sequence    

Annotation

kegg
ID rcu:RCOM_0176470
description hypothetical protein
nr
ID XP_002533077.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SY14
description CSC1-like protein At4g02900 OS=Arabidopsis thaliana GN=At4g02900 PE=3 SV=1
trembl
ID B9T4A8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0176470 PE=4 SV=1
Gene Ontology
ID GO:0016020
description csc1-like protein at4g02900

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_019762_050 0.1522947269 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
3 Hb_001766_030 0.1584872147 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
4 Hb_004089_020 0.1611674114 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
5 Hb_007741_100 0.1613348535 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
6 Hb_012022_140 0.1630132788 - - ADP,ATP carrier protein, putative [Ricinus communis]
7 Hb_001097_090 0.1708046321 - - Translation initiation factor SUI1 family protein, putative [Theobroma cacao]
8 Hb_004162_180 0.1756790121 - - zinc finger protein, putative [Ricinus communis]
9 Hb_003688_070 0.1809014828 - - PREDICTED: mitochondrial substrate carrier family protein E [Jatropha curcas]
10 Hb_000005_300 0.1822546631 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000320_330 0.1843230469 - - uncharacterized protein LOC100527884 [Glycine max]
12 Hb_001979_020 0.1851879525 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
13 Hb_005054_260 0.1861427988 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
14 Hb_027298_010 0.1888023001 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000815_290 0.1923289266 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
16 Hb_006738_030 0.1924401625 - - Ras-related protein Rab7 [Morus notabilis]
17 Hb_002232_060 0.1978988355 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
18 Hb_000002_260 0.1986588195 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000928_060 0.1991510956 - - transporter, putative [Ricinus communis]
20 Hb_000946_100 0.2020824681 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004108_110 Hb_004108_110 Hb_019762_050 Hb_019762_050 Hb_004108_110--Hb_019762_050 Hb_001766_030 Hb_001766_030 Hb_004108_110--Hb_001766_030 Hb_004089_020 Hb_004089_020 Hb_004108_110--Hb_004089_020 Hb_007741_100 Hb_007741_100 Hb_004108_110--Hb_007741_100 Hb_012022_140 Hb_012022_140 Hb_004108_110--Hb_012022_140 Hb_001097_090 Hb_001097_090 Hb_004108_110--Hb_001097_090 Hb_027298_010 Hb_027298_010 Hb_019762_050--Hb_027298_010 Hb_000457_290 Hb_000457_290 Hb_019762_050--Hb_000457_290 Hb_000403_070 Hb_000403_070 Hb_019762_050--Hb_000403_070 Hb_000032_370 Hb_000032_370 Hb_019762_050--Hb_000032_370 Hb_140627_010 Hb_140627_010 Hb_019762_050--Hb_140627_010 Hb_001575_060 Hb_001575_060 Hb_019762_050--Hb_001575_060 Hb_004162_180 Hb_004162_180 Hb_001766_030--Hb_004162_180 Hb_000110_170 Hb_000110_170 Hb_001766_030--Hb_000110_170 Hb_001225_010 Hb_001225_010 Hb_001766_030--Hb_001225_010 Hb_003540_200 Hb_003540_200 Hb_001766_030--Hb_003540_200 Hb_001449_090 Hb_001449_090 Hb_001766_030--Hb_001449_090 Hb_002105_030 Hb_002105_030 Hb_001766_030--Hb_002105_030 Hb_004089_020--Hb_012022_140 Hb_000815_290 Hb_000815_290 Hb_004089_020--Hb_000815_290 Hb_000739_140 Hb_000739_140 Hb_004089_020--Hb_000739_140 Hb_005054_260 Hb_005054_260 Hb_004089_020--Hb_005054_260 Hb_170426_010 Hb_170426_010 Hb_004089_020--Hb_170426_010 Hb_000005_300 Hb_000005_300 Hb_004089_020--Hb_000005_300 Hb_007741_100--Hb_001097_090 Hb_000140_270 Hb_000140_270 Hb_007741_100--Hb_000140_270 Hb_000928_060 Hb_000928_060 Hb_007741_100--Hb_000928_060 Hb_007741_100--Hb_019762_050 Hb_042202_060 Hb_042202_060 Hb_007741_100--Hb_042202_060 Hb_007741_100--Hb_027298_010 Hb_001252_220 Hb_001252_220 Hb_012022_140--Hb_001252_220 Hb_012022_140--Hb_000005_300 Hb_001373_060 Hb_001373_060 Hb_012022_140--Hb_001373_060 Hb_002232_060 Hb_002232_060 Hb_012022_140--Hb_002232_060 Hb_000676_310 Hb_000676_310 Hb_012022_140--Hb_000676_310 Hb_001097_090--Hb_000928_060 Hb_000320_330 Hb_000320_330 Hb_001097_090--Hb_000320_330 Hb_002609_040 Hb_002609_040 Hb_001097_090--Hb_002609_040 Hb_019113_020 Hb_019113_020 Hb_001097_090--Hb_019113_020 Hb_000946_100 Hb_000946_100 Hb_001097_090--Hb_000946_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0553305 0.0718408 0.220023 0.410791 0.05131 0.0778248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.213344 1.58716 0.580785 0.236506 0.712213

CAGE analysis