Hb_000928_060

Information

Type -
Description -
Location Contig928: 28228-30812
Sequence    

Annotation

kegg
ID rcu:RCOM_1517500
description transporter, putative
nr
ID XP_002524032.1
description transporter, putative [Ricinus communis]
swissprot
ID Q9XIQ7
description Probable folate-biopterin transporter 7 OS=Arabidopsis thaliana GN=At1g64890 PE=2 SV=1
trembl
ID B9SDG3
description Transporter, putative OS=Ricinus communis GN=RCOM_1517500 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable folate-biopterin transporter 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62746: 28247-29470 , PASA_asmbl_62747: 29867-30046 , PASA_asmbl_62749: 31633-34227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_060 0.0 - - transporter, putative [Ricinus communis]
2 Hb_001097_090 0.120545921 - - Translation initiation factor SUI1 family protein, putative [Theobroma cacao]
3 Hb_007741_100 0.124385565 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
4 Hb_000946_100 0.1309363637 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
5 Hb_002677_020 0.1316502434 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
6 Hb_001754_080 0.1349091318 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
7 Hb_008566_030 0.1361435584 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
8 Hb_000436_030 0.1445261515 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001575_060 0.1454200055 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
10 Hb_006153_060 0.1493769458 - - catalytic, putative [Ricinus communis]
11 Hb_000479_160 0.150888077 - - Membrane-anchored ubiquitin-fold protein 1 precursor isoform 2 [Theobroma cacao]
12 Hb_001892_070 0.1566692439 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
13 Hb_001865_090 0.1579330361 - - hypothetical protein VITISV_005773 [Vitis vinifera]
14 Hb_019113_020 0.158639378 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
15 Hb_000403_070 0.1596385768 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_011485_020 0.1598360046 - - protein with unknown function [Ricinus communis]
17 Hb_001013_030 0.1603967962 - - GTP-binding protein yptv3, putative [Ricinus communis]
18 Hb_019762_050 0.1607731002 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
19 Hb_005843_140 0.162211458 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
20 Hb_000320_330 0.1642248959 - - uncharacterized protein LOC100527884 [Glycine max]

Gene co-expression network

sample Hb_000928_060 Hb_000928_060 Hb_001097_090 Hb_001097_090 Hb_000928_060--Hb_001097_090 Hb_007741_100 Hb_007741_100 Hb_000928_060--Hb_007741_100 Hb_000946_100 Hb_000946_100 Hb_000928_060--Hb_000946_100 Hb_002677_020 Hb_002677_020 Hb_000928_060--Hb_002677_020 Hb_001754_080 Hb_001754_080 Hb_000928_060--Hb_001754_080 Hb_008566_030 Hb_008566_030 Hb_000928_060--Hb_008566_030 Hb_001097_090--Hb_007741_100 Hb_000320_330 Hb_000320_330 Hb_001097_090--Hb_000320_330 Hb_002609_040 Hb_002609_040 Hb_001097_090--Hb_002609_040 Hb_019113_020 Hb_019113_020 Hb_001097_090--Hb_019113_020 Hb_001097_090--Hb_000946_100 Hb_000140_270 Hb_000140_270 Hb_007741_100--Hb_000140_270 Hb_019762_050 Hb_019762_050 Hb_007741_100--Hb_019762_050 Hb_042202_060 Hb_042202_060 Hb_007741_100--Hb_042202_060 Hb_027298_010 Hb_027298_010 Hb_007741_100--Hb_027298_010 Hb_000016_170 Hb_000016_170 Hb_000946_100--Hb_000016_170 Hb_006573_290 Hb_006573_290 Hb_000946_100--Hb_006573_290 Hb_002876_020 Hb_002876_020 Hb_000946_100--Hb_002876_020 Hb_002154_110 Hb_002154_110 Hb_000946_100--Hb_002154_110 Hb_000946_100--Hb_002677_020 Hb_005496_090 Hb_005496_090 Hb_000946_100--Hb_005496_090 Hb_000733_180 Hb_000733_180 Hb_002677_020--Hb_000733_180 Hb_002677_020--Hb_008566_030 Hb_001489_110 Hb_001489_110 Hb_002677_020--Hb_001489_110 Hb_000403_070 Hb_000403_070 Hb_002677_020--Hb_000403_070 Hb_005016_040 Hb_005016_040 Hb_002677_020--Hb_005016_040 Hb_006153_060 Hb_006153_060 Hb_002677_020--Hb_006153_060 Hb_000060_050 Hb_000060_050 Hb_001754_080--Hb_000060_050 Hb_004158_020 Hb_004158_020 Hb_001754_080--Hb_004158_020 Hb_003305_040 Hb_003305_040 Hb_001754_080--Hb_003305_040 Hb_001754_080--Hb_001489_110 Hb_002110_100 Hb_002110_100 Hb_001754_080--Hb_002110_100 Hb_001754_080--Hb_002677_020 Hb_001307_030 Hb_001307_030 Hb_008566_030--Hb_001307_030 Hb_001541_120 Hb_001541_120 Hb_008566_030--Hb_001541_120 Hb_000116_260 Hb_000116_260 Hb_008566_030--Hb_000116_260 Hb_001514_120 Hb_001514_120 Hb_008566_030--Hb_001514_120 Hb_007416_060 Hb_007416_060 Hb_008566_030--Hb_007416_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.76578 4.32724 9.17183 18.5765 3.81205 6.57562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.02737 27.0976 22.2116 5.28777 19.5083

CAGE analysis