Hb_002609_040

Information

Type transcription factor
Description TF Family: MYB
Location Contig2609: 38941-41169
Sequence    

Annotation

kegg
ID rcu:RCOM_0611390
description DNA binding protein, putative
nr
ID XP_012068071.1
description PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID A0A067LGQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08505 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor divaricata

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27179: 38506-41014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_040 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
2 Hb_001097_090 0.1480984132 - - Translation initiation factor SUI1 family protein, putative [Theobroma cacao]
3 Hb_000436_030 0.148605298 - - conserved hypothetical protein [Ricinus communis]
4 Hb_019113_020 0.1507165985 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
5 Hb_000320_330 0.1541587886 - - uncharacterized protein LOC100527884 [Glycine max]
6 Hb_010402_050 0.1615454442 - - -
7 Hb_011021_040 0.1655770926 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
8 Hb_161175_010 0.1685736563 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
9 Hb_000318_160 0.1692652585 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
10 Hb_000617_200 0.1702277021 - - f-actin capping protein alpha, putative [Ricinus communis]
11 Hb_000946_100 0.1716247034 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
12 Hb_000292_060 0.1722807274 - - transporter, putative [Ricinus communis]
13 Hb_011485_020 0.1732573223 - - protein with unknown function [Ricinus communis]
14 Hb_003050_250 0.1737511032 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
15 Hb_002677_020 0.1741486593 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
16 Hb_000928_060 0.1747558139 - - transporter, putative [Ricinus communis]
17 Hb_000260_210 0.1747661218 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011377_050 0.1747681602 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like isoform X1 [Jatropha curcas]
19 Hb_001953_090 0.1749208508 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
20 Hb_002918_290 0.1753325458 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002609_040 Hb_002609_040 Hb_001097_090 Hb_001097_090 Hb_002609_040--Hb_001097_090 Hb_000436_030 Hb_000436_030 Hb_002609_040--Hb_000436_030 Hb_019113_020 Hb_019113_020 Hb_002609_040--Hb_019113_020 Hb_000320_330 Hb_000320_330 Hb_002609_040--Hb_000320_330 Hb_010402_050 Hb_010402_050 Hb_002609_040--Hb_010402_050 Hb_011021_040 Hb_011021_040 Hb_002609_040--Hb_011021_040 Hb_007741_100 Hb_007741_100 Hb_001097_090--Hb_007741_100 Hb_000928_060 Hb_000928_060 Hb_001097_090--Hb_000928_060 Hb_001097_090--Hb_000320_330 Hb_001097_090--Hb_019113_020 Hb_000946_100 Hb_000946_100 Hb_001097_090--Hb_000946_100 Hb_011485_020 Hb_011485_020 Hb_000436_030--Hb_011485_020 Hb_000436_030--Hb_000320_330 Hb_000479_160 Hb_000479_160 Hb_000436_030--Hb_000479_160 Hb_000292_060 Hb_000292_060 Hb_000436_030--Hb_000292_060 Hb_001329_150 Hb_001329_150 Hb_000436_030--Hb_001329_150 Hb_005269_080 Hb_005269_080 Hb_000436_030--Hb_005269_080 Hb_003050_250 Hb_003050_250 Hb_019113_020--Hb_003050_250 Hb_161175_010 Hb_161175_010 Hb_019113_020--Hb_161175_010 Hb_002503_020 Hb_002503_020 Hb_019113_020--Hb_002503_020 Hb_000125_210 Hb_000125_210 Hb_019113_020--Hb_000125_210 Hb_004125_040 Hb_004125_040 Hb_019113_020--Hb_004125_040 Hb_000318_160 Hb_000318_160 Hb_019113_020--Hb_000318_160 Hb_000384_120 Hb_000384_120 Hb_000320_330--Hb_000384_120 Hb_003633_060 Hb_003633_060 Hb_000320_330--Hb_003633_060 Hb_000320_330--Hb_000479_160 Hb_001172_100 Hb_001172_100 Hb_000320_330--Hb_001172_100 Hb_000320_330--Hb_011485_020 Hb_003581_220 Hb_003581_220 Hb_010402_050--Hb_003581_220 Hb_050806_010 Hb_050806_010 Hb_010402_050--Hb_050806_010 Hb_152910_020 Hb_152910_020 Hb_010402_050--Hb_152910_020 Hb_010402_050--Hb_001172_100 Hb_032969_030 Hb_032969_030 Hb_010402_050--Hb_032969_030 Hb_010402_050--Hb_000318_160 Hb_007037_020 Hb_007037_020 Hb_011021_040--Hb_007037_020 Hb_013399_050 Hb_013399_050 Hb_011021_040--Hb_013399_050 Hb_013405_140 Hb_013405_140 Hb_011021_040--Hb_013405_140 Hb_000175_030 Hb_000175_030 Hb_011021_040--Hb_000175_030 Hb_002016_080 Hb_002016_080 Hb_011021_040--Hb_002016_080 Hb_001172_120 Hb_001172_120 Hb_011021_040--Hb_001172_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23188 1.20525 1.71031 4.60823 0.792862 1.11013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.35596 7.14695 7.2604 0.341391 4.52763

CAGE analysis