Hb_001097_090

Information

Type -
Description -
Location Contig1097: 74434-75587
Sequence    

Annotation

kegg
ID tcc:TCM_031068
description Translation initiation factor SUI1 family protein, putative
nr
ID XP_007021023.1
description Translation initiation factor SUI1 family protein, putative [Theobroma cacao]
swissprot
ID Q0D5W6
description Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1
trembl
ID A0A061F6N8
description Translation initiation factor SUI1 family protein, putative OS=Theobroma cacao GN=TCM_031068 PE=4 SV=1
Gene Ontology
ID GO:0003743
description protein translation factor sui1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001097_090 0.0 - - Translation initiation factor SUI1 family protein, putative [Theobroma cacao]
2 Hb_007741_100 0.1163723073 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
3 Hb_000928_060 0.120545921 - - transporter, putative [Ricinus communis]
4 Hb_000320_330 0.1429028928 - - uncharacterized protein LOC100527884 [Glycine max]
5 Hb_002609_040 0.1480984132 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
6 Hb_019113_020 0.1549914162 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
7 Hb_000946_100 0.1571748103 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
8 Hb_000436_030 0.15783312 - - conserved hypothetical protein [Ricinus communis]
9 Hb_019762_050 0.1615294461 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
10 Hb_003050_250 0.1675004605 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
11 Hb_004108_110 0.1708046321 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002677_020 0.1739614611 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
13 Hb_003633_060 0.1781128579 - - translationally controlled tumor protein [Hevea brasiliensis]
14 Hb_000479_160 0.1785911107 - - Membrane-anchored ubiquitin-fold protein 1 precursor isoform 2 [Theobroma cacao]
15 Hb_000403_070 0.179419518 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_001575_060 0.1806589801 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
17 Hb_011485_020 0.1855226054 - - protein with unknown function [Ricinus communis]
18 Hb_002503_020 0.1860218675 - - Phosphatase 2C family protein, putative [Theobroma cacao]
19 Hb_000140_270 0.1863205571 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
20 Hb_000167_050 0.1865652475 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]

Gene co-expression network

sample Hb_001097_090 Hb_001097_090 Hb_007741_100 Hb_007741_100 Hb_001097_090--Hb_007741_100 Hb_000928_060 Hb_000928_060 Hb_001097_090--Hb_000928_060 Hb_000320_330 Hb_000320_330 Hb_001097_090--Hb_000320_330 Hb_002609_040 Hb_002609_040 Hb_001097_090--Hb_002609_040 Hb_019113_020 Hb_019113_020 Hb_001097_090--Hb_019113_020 Hb_000946_100 Hb_000946_100 Hb_001097_090--Hb_000946_100 Hb_000140_270 Hb_000140_270 Hb_007741_100--Hb_000140_270 Hb_007741_100--Hb_000928_060 Hb_019762_050 Hb_019762_050 Hb_007741_100--Hb_019762_050 Hb_042202_060 Hb_042202_060 Hb_007741_100--Hb_042202_060 Hb_027298_010 Hb_027298_010 Hb_007741_100--Hb_027298_010 Hb_000928_060--Hb_000946_100 Hb_002677_020 Hb_002677_020 Hb_000928_060--Hb_002677_020 Hb_001754_080 Hb_001754_080 Hb_000928_060--Hb_001754_080 Hb_008566_030 Hb_008566_030 Hb_000928_060--Hb_008566_030 Hb_000436_030 Hb_000436_030 Hb_000320_330--Hb_000436_030 Hb_000384_120 Hb_000384_120 Hb_000320_330--Hb_000384_120 Hb_003633_060 Hb_003633_060 Hb_000320_330--Hb_003633_060 Hb_000479_160 Hb_000479_160 Hb_000320_330--Hb_000479_160 Hb_001172_100 Hb_001172_100 Hb_000320_330--Hb_001172_100 Hb_011485_020 Hb_011485_020 Hb_000320_330--Hb_011485_020 Hb_002609_040--Hb_000436_030 Hb_002609_040--Hb_019113_020 Hb_002609_040--Hb_000320_330 Hb_010402_050 Hb_010402_050 Hb_002609_040--Hb_010402_050 Hb_011021_040 Hb_011021_040 Hb_002609_040--Hb_011021_040 Hb_003050_250 Hb_003050_250 Hb_019113_020--Hb_003050_250 Hb_161175_010 Hb_161175_010 Hb_019113_020--Hb_161175_010 Hb_002503_020 Hb_002503_020 Hb_019113_020--Hb_002503_020 Hb_000125_210 Hb_000125_210 Hb_019113_020--Hb_000125_210 Hb_004125_040 Hb_004125_040 Hb_019113_020--Hb_004125_040 Hb_000318_160 Hb_000318_160 Hb_019113_020--Hb_000318_160 Hb_000016_170 Hb_000016_170 Hb_000946_100--Hb_000016_170 Hb_006573_290 Hb_006573_290 Hb_000946_100--Hb_006573_290 Hb_002876_020 Hb_002876_020 Hb_000946_100--Hb_002876_020 Hb_002154_110 Hb_002154_110 Hb_000946_100--Hb_002154_110 Hb_000946_100--Hb_002677_020 Hb_005496_090 Hb_005496_090 Hb_000946_100--Hb_005496_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128936 0.156284 0.366257 0.588514 0.0475372 0.336685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.353778 1.38989 0.956472 0.114779 0.880711

CAGE analysis