Hb_000002_260

Information

Type -
Description -
Location Contig2: 397836-400626
Sequence    

Annotation

kegg
ID rcu:RCOM_0491750
description hypothetical protein
nr
ID XP_002529297.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L7R5
description CASP-like protein 5B3 OS=Arabidopsis thaliana GN=At3g23200 PE=2 SV=1
trembl
ID B9STH8
description CASP-like protein OS=Ricinus communis GN=RCOM_0491750 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 5b3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20085: 397860-400439 , PASA_asmbl_20086: 400539-400731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_260 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002217_460 0.1651303632 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
3 Hb_005321_010 0.1660629454 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
4 Hb_001766_030 0.1744319316 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
5 Hb_001016_080 0.1827606336 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
6 Hb_004108_110 0.1986588195 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001225_010 0.2038394203 - - unnamed protein product [Coffea canephora]
8 Hb_000291_270 0.2069449565 - - hypothetical protein JCGZ_12006 [Jatropha curcas]
9 Hb_004162_180 0.2108398069 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000622_080 0.2191408295 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
11 Hb_003038_190 0.2202080781 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105645961 [Jatropha curcas]
12 Hb_000768_140 0.2215092959 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
13 Hb_077399_010 0.2249656344 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
14 Hb_003540_200 0.2271824625 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
15 Hb_001164_030 0.2294481989 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
16 Hb_138455_010 0.2308921983 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_012053_010 0.2323115143 - - srpk, putative [Ricinus communis]
18 Hb_004100_090 0.2333670331 - - RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 [Hevea brasiliensis]
19 Hb_000836_010 0.234630384 - - beta-cyanoalanine synthase [Hevea brasiliensis]
20 Hb_000110_170 0.2349571567 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000002_260 Hb_000002_260 Hb_002217_460 Hb_002217_460 Hb_000002_260--Hb_002217_460 Hb_005321_010 Hb_005321_010 Hb_000002_260--Hb_005321_010 Hb_001766_030 Hb_001766_030 Hb_000002_260--Hb_001766_030 Hb_001016_080 Hb_001016_080 Hb_000002_260--Hb_001016_080 Hb_004108_110 Hb_004108_110 Hb_000002_260--Hb_004108_110 Hb_001225_010 Hb_001225_010 Hb_000002_260--Hb_001225_010 Hb_000099_070 Hb_000099_070 Hb_002217_460--Hb_000099_070 Hb_002217_460--Hb_005321_010 Hb_091889_010 Hb_091889_010 Hb_002217_460--Hb_091889_010 Hb_002217_460--Hb_001016_080 Hb_001449_100 Hb_001449_100 Hb_002217_460--Hb_001449_100 Hb_004100_090 Hb_004100_090 Hb_005321_010--Hb_004100_090 Hb_012053_010 Hb_012053_010 Hb_005321_010--Hb_012053_010 Hb_003540_200 Hb_003540_200 Hb_005321_010--Hb_003540_200 Hb_001164_030 Hb_001164_030 Hb_005321_010--Hb_001164_030 Hb_004162_180 Hb_004162_180 Hb_001766_030--Hb_004162_180 Hb_000110_170 Hb_000110_170 Hb_001766_030--Hb_000110_170 Hb_001766_030--Hb_001225_010 Hb_001766_030--Hb_003540_200 Hb_001449_090 Hb_001449_090 Hb_001766_030--Hb_001449_090 Hb_002105_030 Hb_002105_030 Hb_001766_030--Hb_002105_030 Hb_000768_140 Hb_000768_140 Hb_001016_080--Hb_000768_140 Hb_000291_270 Hb_000291_270 Hb_001016_080--Hb_000291_270 Hb_002900_130 Hb_002900_130 Hb_001016_080--Hb_002900_130 Hb_020805_060 Hb_020805_060 Hb_001016_080--Hb_020805_060 Hb_000483_090 Hb_000483_090 Hb_001016_080--Hb_000483_090 Hb_154141_030 Hb_154141_030 Hb_001016_080--Hb_154141_030 Hb_019762_050 Hb_019762_050 Hb_004108_110--Hb_019762_050 Hb_004108_110--Hb_001766_030 Hb_004089_020 Hb_004089_020 Hb_004108_110--Hb_004089_020 Hb_007741_100 Hb_007741_100 Hb_004108_110--Hb_007741_100 Hb_012022_140 Hb_012022_140 Hb_004108_110--Hb_012022_140 Hb_001097_090 Hb_001097_090 Hb_004108_110--Hb_001097_090 Hb_001172_100 Hb_001172_100 Hb_001225_010--Hb_001172_100 Hb_003020_330 Hb_003020_330 Hb_001225_010--Hb_003020_330 Hb_001225_010--Hb_000110_170 Hb_000203_020 Hb_000203_020 Hb_001225_010--Hb_000203_020 Hb_001225_010--Hb_001449_090 Hb_000878_020 Hb_000878_020 Hb_001225_010--Hb_000878_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.66037 4.73343 2.73145 26.2514 2.94066 2.42466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.06438 80.5664 15.237 3.0429 15.6897

CAGE analysis