Hb_011609_110

Information

Type -
Description -
Location Contig11609: 103369-111640
Sequence    

Annotation

kegg
ID vvi:100264926
description T-complex protein 1 subunit gamma
nr
ID XP_012070504.1
description PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
swissprot
ID Q84WV1
description T-complex protein 1 subunit gamma OS=Arabidopsis thaliana GN=CCT3 PE=1 SV=1
trembl
ID A0A067L6R0
description T-complex protein 1 subunit gamma OS=Jatropha curcas GN=JCGZ_02769 PE=3 SV=1
Gene Ontology
ID GO:0005524
description t-complex protein 1 subunit gamma

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04960: 102807-103112
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_110 0.0 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
2 Hb_033834_050 0.1525034966 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000656_410 0.1676065475 - - hypothetical protein POPTR_0003s06410g [Populus trichocarpa]
4 Hb_001449_100 0.1681413617 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
5 Hb_042871_010 0.1707153373 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
6 Hb_028271_020 0.1787989638 - - acyl-CoA oxidase, putative [Ricinus communis]
7 Hb_002784_100 0.1938914005 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
8 Hb_003398_020 0.1992862051 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
9 Hb_001266_030 0.2057268288 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
10 Hb_000239_110 0.2185003611 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
11 Hb_001623_070 0.2191865339 - - cytochrome B5 isoform 1, putative [Ricinus communis]
12 Hb_002908_070 0.220971304 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
13 Hb_014497_080 0.2300225564 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
14 Hb_005725_100 0.2305337287 - - hypothetical protein 30 [Hevea brasiliensis]
15 Hb_043623_010 0.2310744021 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
16 Hb_003057_020 0.2326604305 - - 40S ribosomal protein S23, putative [Ricinus communis]
17 Hb_086692_020 0.2346844514 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
18 Hb_003540_200 0.2361665555 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
19 Hb_004679_060 0.2367286587 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012053_010 0.2423191417 - - srpk, putative [Ricinus communis]

Gene co-expression network

sample Hb_011609_110 Hb_011609_110 Hb_033834_050 Hb_033834_050 Hb_011609_110--Hb_033834_050 Hb_000656_410 Hb_000656_410 Hb_011609_110--Hb_000656_410 Hb_001449_100 Hb_001449_100 Hb_011609_110--Hb_001449_100 Hb_042871_010 Hb_042871_010 Hb_011609_110--Hb_042871_010 Hb_028271_020 Hb_028271_020 Hb_011609_110--Hb_028271_020 Hb_002784_100 Hb_002784_100 Hb_011609_110--Hb_002784_100 Hb_033834_050--Hb_002784_100 Hb_033834_050--Hb_042871_010 Hb_033834_050--Hb_028271_020 Hb_033834_050--Hb_001449_100 Hb_000062_300 Hb_000062_300 Hb_033834_050--Hb_000062_300 Hb_000656_410--Hb_042871_010 Hb_000656_410--Hb_002784_100 Hb_000656_410--Hb_033834_050 Hb_003891_080 Hb_003891_080 Hb_000656_410--Hb_003891_080 Hb_005321_010 Hb_005321_010 Hb_000656_410--Hb_005321_010 Hb_001449_100--Hb_028271_020 Hb_004679_060 Hb_004679_060 Hb_001449_100--Hb_004679_060 Hb_001449_100--Hb_002784_100 Hb_003398_020 Hb_003398_020 Hb_001449_100--Hb_003398_020 Hb_007017_010 Hb_007017_010 Hb_001449_100--Hb_007017_010 Hb_042871_010--Hb_000062_300 Hb_000239_110 Hb_000239_110 Hb_042871_010--Hb_000239_110 Hb_014497_080 Hb_014497_080 Hb_042871_010--Hb_014497_080 Hb_028271_020--Hb_002784_100 Hb_012053_010 Hb_012053_010 Hb_028271_020--Hb_012053_010 Hb_003540_200 Hb_003540_200 Hb_028271_020--Hb_003540_200 Hb_000997_190 Hb_000997_190 Hb_028271_020--Hb_000997_190 Hb_002784_100--Hb_042871_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104923 0.38659 0.292239 0.300886 0.0865078 0.0702227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.4792 3.48679 0.2339 0.415155 0

CAGE analysis