Hb_033834_050

Information

Type -
Description -
Location Contig33834: 43475-44071
Sequence    

Annotation

kegg
ID rcu:RCOM_0714620
description hypothetical protein
nr
ID XP_002529719.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SUQ0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0714620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033834_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002784_100 0.1492894331 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
3 Hb_011609_110 0.1525034966 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
4 Hb_042871_010 0.1553090984 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
5 Hb_028271_020 0.1738085447 - - acyl-CoA oxidase, putative [Ricinus communis]
6 Hb_001449_100 0.1792731696 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
7 Hb_000062_300 0.1850697678 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
8 Hb_014497_080 0.1851476714 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
9 Hb_011628_020 0.1867205673 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000656_410 0.1912704894 - - hypothetical protein POPTR_0003s06410g [Populus trichocarpa]
11 Hb_003891_080 0.2108188308 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
12 Hb_003732_040 0.2118736887 - - putative esterase family protein [Populus trichocarpa]
13 Hb_086692_020 0.224312766 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
14 Hb_002908_070 0.2256664405 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
15 Hb_003777_360 0.2293570492 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
16 Hb_026687_010 0.2328265179 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Eucalyptus grandis]
17 Hb_003398_020 0.2385946448 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
18 Hb_000622_080 0.2435559423 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
19 Hb_005321_010 0.2521336056 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
20 Hb_001266_030 0.2524303436 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_033834_050 Hb_033834_050 Hb_002784_100 Hb_002784_100 Hb_033834_050--Hb_002784_100 Hb_011609_110 Hb_011609_110 Hb_033834_050--Hb_011609_110 Hb_042871_010 Hb_042871_010 Hb_033834_050--Hb_042871_010 Hb_028271_020 Hb_028271_020 Hb_033834_050--Hb_028271_020 Hb_001449_100 Hb_001449_100 Hb_033834_050--Hb_001449_100 Hb_000062_300 Hb_000062_300 Hb_033834_050--Hb_000062_300 Hb_002784_100--Hb_028271_020 Hb_002784_100--Hb_001449_100 Hb_000656_410 Hb_000656_410 Hb_002784_100--Hb_000656_410 Hb_002784_100--Hb_011609_110 Hb_002784_100--Hb_042871_010 Hb_011609_110--Hb_000656_410 Hb_011609_110--Hb_001449_100 Hb_011609_110--Hb_042871_010 Hb_011609_110--Hb_028271_020 Hb_042871_010--Hb_000656_410 Hb_042871_010--Hb_000062_300 Hb_000239_110 Hb_000239_110 Hb_042871_010--Hb_000239_110 Hb_014497_080 Hb_014497_080 Hb_042871_010--Hb_014497_080 Hb_028271_020--Hb_001449_100 Hb_012053_010 Hb_012053_010 Hb_028271_020--Hb_012053_010 Hb_003540_200 Hb_003540_200 Hb_028271_020--Hb_003540_200 Hb_000997_190 Hb_000997_190 Hb_028271_020--Hb_000997_190 Hb_004679_060 Hb_004679_060 Hb_001449_100--Hb_004679_060 Hb_003398_020 Hb_003398_020 Hb_001449_100--Hb_003398_020 Hb_007017_010 Hb_007017_010 Hb_001449_100--Hb_007017_010 Hb_000062_300--Hb_014497_080 Hb_003732_040 Hb_003732_040 Hb_000062_300--Hb_003732_040 Hb_000012_070 Hb_000012_070 Hb_000062_300--Hb_000012_070 Hb_003891_080 Hb_003891_080 Hb_000062_300--Hb_003891_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175231 1.38638 0.442178 0.646776 0.0823042 0.0780847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.508662 10.2338 0.838379 1.60709 0.154601

CAGE analysis