Hb_000656_410

Information

Type -
Description -
Location Contig656: 371174-371491
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06410g
description hypothetical protein
nr
ID XP_006385515.1
description hypothetical protein POPTR_0003s06410g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GPU7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06410g PE=4 SV=1
Gene Ontology
ID GO:0016021
description serine rich protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000656_410 0.0 - - hypothetical protein POPTR_0003s06410g [Populus trichocarpa]
2 Hb_042871_010 0.1466217213 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
3 Hb_011609_110 0.1676065475 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
4 Hb_002784_100 0.181086142 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
5 Hb_033834_050 0.1912704894 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003891_080 0.1932316117 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
7 Hb_005321_010 0.2102022392 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
8 Hb_000062_300 0.2123576502 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
9 Hb_028271_020 0.2177362153 - - acyl-CoA oxidase, putative [Ricinus communis]
10 Hb_014497_080 0.2201474335 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
11 Hb_001164_030 0.2243742417 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
12 Hb_003398_020 0.2299961721 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
13 Hb_012573_010 0.2327357058 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
14 Hb_011628_020 0.2355738943 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004100_090 0.2374557439 - - RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 [Hevea brasiliensis]
16 Hb_086692_020 0.2390774903 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
17 Hb_001266_030 0.2406391237 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
18 Hb_001449_100 0.2411876596 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
19 Hb_003540_200 0.2447095531 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
20 Hb_000239_110 0.2449324425 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000656_410 Hb_000656_410 Hb_042871_010 Hb_042871_010 Hb_000656_410--Hb_042871_010 Hb_011609_110 Hb_011609_110 Hb_000656_410--Hb_011609_110 Hb_002784_100 Hb_002784_100 Hb_000656_410--Hb_002784_100 Hb_033834_050 Hb_033834_050 Hb_000656_410--Hb_033834_050 Hb_003891_080 Hb_003891_080 Hb_000656_410--Hb_003891_080 Hb_005321_010 Hb_005321_010 Hb_000656_410--Hb_005321_010 Hb_042871_010--Hb_033834_050 Hb_042871_010--Hb_011609_110 Hb_000062_300 Hb_000062_300 Hb_042871_010--Hb_000062_300 Hb_000239_110 Hb_000239_110 Hb_042871_010--Hb_000239_110 Hb_014497_080 Hb_014497_080 Hb_042871_010--Hb_014497_080 Hb_011609_110--Hb_033834_050 Hb_001449_100 Hb_001449_100 Hb_011609_110--Hb_001449_100 Hb_028271_020 Hb_028271_020 Hb_011609_110--Hb_028271_020 Hb_011609_110--Hb_002784_100 Hb_002784_100--Hb_033834_050 Hb_002784_100--Hb_028271_020 Hb_002784_100--Hb_001449_100 Hb_002784_100--Hb_042871_010 Hb_033834_050--Hb_028271_020 Hb_033834_050--Hb_001449_100 Hb_033834_050--Hb_000062_300 Hb_003891_080--Hb_000062_300 Hb_003891_080--Hb_033834_050 Hb_003777_360 Hb_003777_360 Hb_003891_080--Hb_003777_360 Hb_000130_230 Hb_000130_230 Hb_003891_080--Hb_000130_230 Hb_003891_080--Hb_042871_010 Hb_004100_090 Hb_004100_090 Hb_005321_010--Hb_004100_090 Hb_000002_260 Hb_000002_260 Hb_005321_010--Hb_000002_260 Hb_012053_010 Hb_012053_010 Hb_005321_010--Hb_012053_010 Hb_003540_200 Hb_003540_200 Hb_005321_010--Hb_003540_200 Hb_002217_460 Hb_002217_460 Hb_005321_010--Hb_002217_460 Hb_001164_030 Hb_001164_030 Hb_005321_010--Hb_001164_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.499801 0.233867 0.776104 0.129081 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.64923 5.61886 0.747845 0.468324 0

CAGE analysis