Hb_003777_360

Information

Type transcription factor
Description TF Family: ERF
Location Contig3777: 442940-445113
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21690g
description POPTRDRAFT_761071; AP2 domain-containing transcription factor family protein
nr
ID XP_002306712.2
description AP2 domain-containing transcription factor family protein [Populus trichocarpa]
swissprot
ID P93007
description Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1
trembl
ID B9H7U8
description AP2 domain-containing transcription factor family protein OS=Populus trichocarpa GN=POPTR_0005s21690g PE=4 SV=2
Gene Ontology
ID GO:0050789
description low quality protein: ethylene-responsive transcription factor abr1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38482: 442868-444695
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_360 0.0 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
2 Hb_000117_100 0.1837482121 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009974_020 0.1873396156 - - PREDICTED: uncharacterized protein LOC104427753 [Eucalyptus grandis]
4 Hb_000836_490 0.1967879422 - - PREDICTED: E3 SUMO-protein ligase pli1-like [Jatropha curcas]
5 Hb_028271_020 0.2036967649 - - acyl-CoA oxidase, putative [Ricinus communis]
6 Hb_000130_230 0.205348851 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
7 Hb_001488_370 0.21504386 - - Esterase PIR7B, putative [Ricinus communis]
8 Hb_003891_080 0.2170187889 - - hypothetical protein JCGZ_16710 [Jatropha curcas]
9 Hb_002784_100 0.2218796744 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
10 Hb_001369_600 0.2242815978 - - kinase, putative [Ricinus communis]
11 Hb_033834_050 0.2293570492 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002067_140 0.2320727417 - - -
13 Hb_001951_250 0.2411038487 - - -
14 Hb_009680_040 0.2411827338 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_001638_070 0.2443073139 transcription factor TF Family: bHLH Basic helix-loop-helix DNA-binding family protein [Theobroma cacao]
16 Hb_000594_090 0.2464509876 - - PREDICTED: allene oxide cyclase 3, chloroplastic-like [Populus euphratica]
17 Hb_007885_050 0.2469402619 - - PREDICTED: lignin-forming anionic peroxidase-like [Jatropha curcas]
18 Hb_003398_140 0.2482074028 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_000656_410 0.2513169171 - - hypothetical protein POPTR_0003s06410g [Populus trichocarpa]
20 Hb_001123_100 0.2515350609 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003777_360 Hb_003777_360 Hb_000117_100 Hb_000117_100 Hb_003777_360--Hb_000117_100 Hb_009974_020 Hb_009974_020 Hb_003777_360--Hb_009974_020 Hb_000836_490 Hb_000836_490 Hb_003777_360--Hb_000836_490 Hb_028271_020 Hb_028271_020 Hb_003777_360--Hb_028271_020 Hb_000130_230 Hb_000130_230 Hb_003777_360--Hb_000130_230 Hb_001488_370 Hb_001488_370 Hb_003777_360--Hb_001488_370 Hb_000732_210 Hb_000732_210 Hb_000117_100--Hb_000732_210 Hb_007885_050 Hb_007885_050 Hb_000117_100--Hb_007885_050 Hb_000117_100--Hb_009974_020 Hb_000117_100--Hb_000836_490 Hb_004787_040 Hb_004787_040 Hb_000117_100--Hb_004787_040 Hb_140049_010 Hb_140049_010 Hb_009974_020--Hb_140049_010 Hb_001141_110 Hb_001141_110 Hb_009974_020--Hb_001141_110 Hb_007558_020 Hb_007558_020 Hb_009974_020--Hb_007558_020 Hb_009974_020--Hb_001488_370 Hb_000836_490--Hb_007885_050 Hb_000594_090 Hb_000594_090 Hb_000836_490--Hb_000594_090 Hb_004208_130 Hb_004208_130 Hb_000836_490--Hb_004208_130 Hb_000836_490--Hb_028271_020 Hb_001449_100 Hb_001449_100 Hb_028271_020--Hb_001449_100 Hb_002784_100 Hb_002784_100 Hb_028271_020--Hb_002784_100 Hb_012053_010 Hb_012053_010 Hb_028271_020--Hb_012053_010 Hb_003540_200 Hb_003540_200 Hb_028271_020--Hb_003540_200 Hb_033834_050 Hb_033834_050 Hb_028271_020--Hb_033834_050 Hb_000997_190 Hb_000997_190 Hb_028271_020--Hb_000997_190 Hb_001951_250 Hb_001951_250 Hb_000130_230--Hb_001951_250 Hb_003891_080 Hb_003891_080 Hb_000130_230--Hb_003891_080 Hb_001477_150 Hb_001477_150 Hb_000130_230--Hb_001477_150 Hb_001767_050 Hb_001767_050 Hb_000130_230--Hb_001767_050 Hb_000892_070 Hb_000892_070 Hb_000130_230--Hb_000892_070 Hb_012545_050 Hb_012545_050 Hb_001488_370--Hb_012545_050 Hb_012053_050 Hb_012053_050 Hb_001488_370--Hb_012053_050 Hb_001369_600 Hb_001369_600 Hb_001488_370--Hb_001369_600 Hb_001488_370--Hb_000997_190 Hb_001437_130 Hb_001437_130 Hb_001488_370--Hb_001437_130 Hb_001776_170 Hb_001776_170 Hb_001488_370--Hb_001776_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.234065 5.39583 3.05443 1.70468 0 0.0116523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.21316 30.1878 12.4693 7.88195 0.223318

CAGE analysis