Hb_000117_100

Information

Type -
Description -
Location Contig117: 147482-147826
Sequence    

Annotation

kegg
ID rcu:RCOM_0702130
description hypothetical protein
nr
ID XP_002523545.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SC26
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0702130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05276: 147435-148054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000117_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003777_360 0.1837482121 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
3 Hb_000732_210 0.1899533846 - - hexose transporter 1 [Hevea brasiliensis]
4 Hb_007885_050 0.2054410335 - - PREDICTED: lignin-forming anionic peroxidase-like [Jatropha curcas]
5 Hb_009974_020 0.2162316825 - - PREDICTED: uncharacterized protein LOC104427753 [Eucalyptus grandis]
6 Hb_000836_490 0.2301732243 - - PREDICTED: E3 SUMO-protein ligase pli1-like [Jatropha curcas]
7 Hb_004787_040 0.2317035439 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001488_370 0.2318673886 - - Esterase PIR7B, putative [Ricinus communis]
9 Hb_170426_010 0.2345632775 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
10 Hb_001141_110 0.23499244 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
11 Hb_000270_740 0.236446595 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
12 Hb_001369_600 0.2383605716 - - kinase, putative [Ricinus communis]
13 Hb_000120_150 0.2390201979 - - hypothetical protein JCGZ_08453 [Jatropha curcas]
14 Hb_003020_170 0.2392327174 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
15 Hb_000072_340 0.2425443037 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003540_200 0.2454115637 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
17 Hb_010506_010 0.2462203688 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
18 Hb_009680_040 0.2479753853 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
19 Hb_004679_060 0.2491050466 - - conserved hypothetical protein [Ricinus communis]
20 Hb_028271_020 0.2520609067 - - acyl-CoA oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000117_100 Hb_000117_100 Hb_003777_360 Hb_003777_360 Hb_000117_100--Hb_003777_360 Hb_000732_210 Hb_000732_210 Hb_000117_100--Hb_000732_210 Hb_007885_050 Hb_007885_050 Hb_000117_100--Hb_007885_050 Hb_009974_020 Hb_009974_020 Hb_000117_100--Hb_009974_020 Hb_000836_490 Hb_000836_490 Hb_000117_100--Hb_000836_490 Hb_004787_040 Hb_004787_040 Hb_000117_100--Hb_004787_040 Hb_003777_360--Hb_009974_020 Hb_003777_360--Hb_000836_490 Hb_028271_020 Hb_028271_020 Hb_003777_360--Hb_028271_020 Hb_000130_230 Hb_000130_230 Hb_003777_360--Hb_000130_230 Hb_001488_370 Hb_001488_370 Hb_003777_360--Hb_001488_370 Hb_162275_020 Hb_162275_020 Hb_000732_210--Hb_162275_020 Hb_130719_010 Hb_130719_010 Hb_000732_210--Hb_130719_010 Hb_000614_170 Hb_000614_170 Hb_000732_210--Hb_000614_170 Hb_000297_020 Hb_000297_020 Hb_000732_210--Hb_000297_020 Hb_002217_230 Hb_002217_230 Hb_000732_210--Hb_002217_230 Hb_007885_050--Hb_000836_490 Hb_000594_090 Hb_000594_090 Hb_007885_050--Hb_000594_090 Hb_026527_020 Hb_026527_020 Hb_007885_050--Hb_026527_020 Hb_008725_040 Hb_008725_040 Hb_007885_050--Hb_008725_040 Hb_006538_190 Hb_006538_190 Hb_007885_050--Hb_006538_190 Hb_140049_010 Hb_140049_010 Hb_009974_020--Hb_140049_010 Hb_001141_110 Hb_001141_110 Hb_009974_020--Hb_001141_110 Hb_007558_020 Hb_007558_020 Hb_009974_020--Hb_007558_020 Hb_009974_020--Hb_001488_370 Hb_000836_490--Hb_000594_090 Hb_004208_130 Hb_004208_130 Hb_000836_490--Hb_004208_130 Hb_000836_490--Hb_028271_020 Hb_002309_050 Hb_002309_050 Hb_004787_040--Hb_002309_050 Hb_170426_010 Hb_170426_010 Hb_004787_040--Hb_170426_010 Hb_000270_740 Hb_000270_740 Hb_004787_040--Hb_000270_740 Hb_020805_060 Hb_020805_060 Hb_004787_040--Hb_020805_060 Hb_004679_060 Hb_004679_060 Hb_004787_040--Hb_004679_060 Hb_000189_540 Hb_000189_540 Hb_004787_040--Hb_000189_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.03547 18.923 34.3276 46.8582 0 1.47231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.655 157.294 97.4865 58.6722 1.05489

CAGE analysis