Hb_026527_020

Information

Type -
Description -
Location Contig26527: 5659-12759
Sequence    

Annotation

kegg
ID rcu:RCOM_0181880
description S-adenosylmethionine-dependent methyltransferase, putative
nr
ID XP_012079811.1
description PREDICTED: putative methyltransferase DDB_G0268948 [Jatropha curcas]
swissprot
ID Q55EX9
description Putative methyltransferase DDB_G0268948 OS=Dictyostelium discoideum GN=DDB_G0268948 PE=1 SV=2
trembl
ID A0A067KHY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15344 PE=4 SV=1
Gene Ontology
ID GO:0008168
description methyltransferase ddb_g0268948

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27734: 7505-8859 , PASA_asmbl_27735: 7754-12498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026527_020 0.0 - - PREDICTED: putative methyltransferase DDB_G0268948 [Jatropha curcas]
2 Hb_006420_090 0.2063236038 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
3 Hb_007885_050 0.2203623044 - - PREDICTED: lignin-forming anionic peroxidase-like [Jatropha curcas]
4 Hb_001268_130 0.2384620966 - - hypothetical protein JCGZ_26837 [Jatropha curcas]
5 Hb_011016_010 0.2388247073 - - PREDICTED: auxin response factor 2-like [Jatropha curcas]
6 Hb_000836_490 0.2399937041 - - PREDICTED: E3 SUMO-protein ligase pli1-like [Jatropha curcas]
7 Hb_003038_170 0.2674214602 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000675_060 0.269160008 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000032_580 0.272114349 - - hypothetical protein RCOM_1311780 [Ricinus communis]
10 Hb_003750_030 0.2774411749 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
11 Hb_002284_190 0.2810069717 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
12 Hb_007101_290 0.2847899469 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
13 Hb_008014_030 0.2868948189 - - Aquaporin NIP1.1, putative [Ricinus communis]
14 Hb_080147_100 0.294324432 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
15 Hb_000140_160 0.2956829546 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
16 Hb_000056_330 0.2966343632 - - unnamed protein product [Vitis vinifera]
17 Hb_183623_010 0.2995228555 - - aldo-keto reductase, putative [Ricinus communis]
18 Hb_007101_230 0.2999529524 - - leucine rich repeat-containing protein, putative [Ricinus communis]
19 Hb_158092_060 0.3000867309 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
20 Hb_000237_240 0.3013394527 - - -

Gene co-expression network

sample Hb_026527_020 Hb_026527_020 Hb_006420_090 Hb_006420_090 Hb_026527_020--Hb_006420_090 Hb_007885_050 Hb_007885_050 Hb_026527_020--Hb_007885_050 Hb_001268_130 Hb_001268_130 Hb_026527_020--Hb_001268_130 Hb_011016_010 Hb_011016_010 Hb_026527_020--Hb_011016_010 Hb_000836_490 Hb_000836_490 Hb_026527_020--Hb_000836_490 Hb_003038_170 Hb_003038_170 Hb_026527_020--Hb_003038_170 Hb_007101_290 Hb_007101_290 Hb_006420_090--Hb_007101_290 Hb_007317_080 Hb_007317_080 Hb_006420_090--Hb_007317_080 Hb_105328_030 Hb_105328_030 Hb_006420_090--Hb_105328_030 Hb_000300_130 Hb_000300_130 Hb_006420_090--Hb_000300_130 Hb_006420_090--Hb_000836_490 Hb_007885_050--Hb_000836_490 Hb_000117_100 Hb_000117_100 Hb_007885_050--Hb_000117_100 Hb_000594_090 Hb_000594_090 Hb_007885_050--Hb_000594_090 Hb_008725_040 Hb_008725_040 Hb_007885_050--Hb_008725_040 Hb_006538_190 Hb_006538_190 Hb_007885_050--Hb_006538_190 Hb_007101_230 Hb_007101_230 Hb_001268_130--Hb_007101_230 Hb_007072_020 Hb_007072_020 Hb_001268_130--Hb_007072_020 Hb_000032_580 Hb_000032_580 Hb_001268_130--Hb_000032_580 Hb_001268_130--Hb_003038_170 Hb_000056_330 Hb_000056_330 Hb_001268_130--Hb_000056_330 Hb_131060_010 Hb_131060_010 Hb_011016_010--Hb_131060_010 Hb_011016_010--Hb_000836_490 Hb_000223_180 Hb_000223_180 Hb_011016_010--Hb_000223_180 Hb_011016_010--Hb_000594_090 Hb_011016_010--Hb_007885_050 Hb_003777_360 Hb_003777_360 Hb_000836_490--Hb_003777_360 Hb_000836_490--Hb_000594_090 Hb_004208_130 Hb_004208_130 Hb_000836_490--Hb_004208_130 Hb_028271_020 Hb_028271_020 Hb_000836_490--Hb_028271_020 Hb_000836_490--Hb_000117_100 Hb_138710_010 Hb_138710_010 Hb_003038_170--Hb_138710_010 Hb_002798_010 Hb_002798_010 Hb_003038_170--Hb_002798_010 Hb_094437_060 Hb_094437_060 Hb_003038_170--Hb_094437_060 Hb_003038_170--Hb_000032_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33932 4.84128 4.84195 12.2726 0.0329616 0.0456953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.73012 98.6255 22.6788 137.014 1.9034

CAGE analysis