Hb_011016_010

Information

Type -
Description -
Location Contig11016: 4976-10947
Sequence    

Annotation

kegg
ID fve:101312532
description auxin response factor 2-like
nr
ID XP_012090598.1
description PREDICTED: auxin response factor 2-like [Jatropha curcas]
swissprot
ID Q94JM3
description Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2
trembl
ID A0A067JSN2
description Auxin response factor OS=Jatropha curcas GN=JCGZ_26375 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011016_010 0.0 - - PREDICTED: auxin response factor 2-like [Jatropha curcas]
2 Hb_131060_010 0.2193793249 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
3 Hb_026527_020 0.2388247073 - - PREDICTED: putative methyltransferase DDB_G0268948 [Jatropha curcas]
4 Hb_000836_490 0.2612412923 - - PREDICTED: E3 SUMO-protein ligase pli1-like [Jatropha curcas]
5 Hb_000223_180 0.265657068 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
6 Hb_000594_090 0.2672457676 - - PREDICTED: allene oxide cyclase 3, chloroplastic-like [Populus euphratica]
7 Hb_007885_050 0.282167781 - - PREDICTED: lignin-forming anionic peroxidase-like [Jatropha curcas]
8 Hb_038134_010 0.2948333807 - - -
9 Hb_007808_020 0.2988437667 - - -
10 Hb_002382_030 0.3001951315 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Malus domestica]
11 Hb_003750_030 0.3097609847 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
12 Hb_003777_360 0.3110776979 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
13 Hb_001079_020 0.3126498868 - - hypothetical protein POPTR_0012s13720g [Populus trichocarpa]
14 Hb_041405_010 0.3157390652 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Glycine max]
15 Hb_017170_010 0.3178158639 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
16 Hb_002253_060 0.3194359369 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006420_090 0.321434084 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
18 Hb_000062_300 0.3269020529 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
19 Hb_003052_230 0.3284257969 - - conserved hypothetical protein [Ricinus communis]
20 Hb_083103_030 0.3298285407 - - putative retrotransposon protein [Malus domestica]

Gene co-expression network

sample Hb_011016_010 Hb_011016_010 Hb_131060_010 Hb_131060_010 Hb_011016_010--Hb_131060_010 Hb_026527_020 Hb_026527_020 Hb_011016_010--Hb_026527_020 Hb_000836_490 Hb_000836_490 Hb_011016_010--Hb_000836_490 Hb_000223_180 Hb_000223_180 Hb_011016_010--Hb_000223_180 Hb_000594_090 Hb_000594_090 Hb_011016_010--Hb_000594_090 Hb_007885_050 Hb_007885_050 Hb_011016_010--Hb_007885_050 Hb_007808_020 Hb_007808_020 Hb_131060_010--Hb_007808_020 Hb_000350_080 Hb_000350_080 Hb_131060_010--Hb_000350_080 Hb_001959_150 Hb_001959_150 Hb_131060_010--Hb_001959_150 Hb_028486_070 Hb_028486_070 Hb_131060_010--Hb_028486_070 Hb_001080_010 Hb_001080_010 Hb_131060_010--Hb_001080_010 Hb_006420_090 Hb_006420_090 Hb_026527_020--Hb_006420_090 Hb_026527_020--Hb_007885_050 Hb_001268_130 Hb_001268_130 Hb_026527_020--Hb_001268_130 Hb_026527_020--Hb_000836_490 Hb_003038_170 Hb_003038_170 Hb_026527_020--Hb_003038_170 Hb_000836_490--Hb_007885_050 Hb_003777_360 Hb_003777_360 Hb_000836_490--Hb_003777_360 Hb_000836_490--Hb_000594_090 Hb_004208_130 Hb_004208_130 Hb_000836_490--Hb_004208_130 Hb_028271_020 Hb_028271_020 Hb_000836_490--Hb_028271_020 Hb_000117_100 Hb_000117_100 Hb_000836_490--Hb_000117_100 Hb_000223_180--Hb_003777_360 Hb_010519_030 Hb_010519_030 Hb_000223_180--Hb_010519_030 Hb_001079_020 Hb_001079_020 Hb_000223_180--Hb_001079_020 Hb_003106_120 Hb_003106_120 Hb_000223_180--Hb_003106_120 Hb_000130_230 Hb_000130_230 Hb_000223_180--Hb_000130_230 Hb_029879_090 Hb_029879_090 Hb_000594_090--Hb_029879_090 Hb_000594_090--Hb_007885_050 Hb_038134_010 Hb_038134_010 Hb_000594_090--Hb_038134_010 Hb_000563_260 Hb_000563_260 Hb_000594_090--Hb_000563_260 Hb_008725_040 Hb_008725_040 Hb_000594_090--Hb_008725_040 Hb_007885_050--Hb_000117_100 Hb_007885_050--Hb_008725_040 Hb_006538_190 Hb_006538_190 Hb_007885_050--Hb_006538_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.121793 0.246735 0.0761497 0 0.0182659 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0891401 6.52068 2.20803 4.51492 0

CAGE analysis