Hb_007808_020

Information

Type -
Description -
Location Contig7808: 23915-26125
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007808_020 0.0 - - -
2 Hb_000350_080 0.0572087026 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
3 Hb_001959_150 0.1031058687 - - -
4 Hb_005072_010 0.1466918388 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
5 Hb_000068_030 0.1531515241 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
6 Hb_131060_010 0.1848274357 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
7 Hb_080653_010 0.187571644 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_001080_010 0.2214793934 - - -
9 Hb_000948_100 0.2535467541 - - -
10 Hb_000084_040 0.2813744979 - - hypothetical protein RCOM_1007940 [Ricinus communis]
11 Hb_000249_120 0.2973173261 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
12 Hb_011016_010 0.2988437667 - - PREDICTED: auxin response factor 2-like [Jatropha curcas]
13 Hb_018464_060 0.312028474 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_003754_080 0.3171803616 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
15 Hb_008516_040 0.3178125344 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000375_340 0.3239395853 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Populus euphratica]
17 Hb_000594_090 0.3309893936 - - PREDICTED: allene oxide cyclase 3, chloroplastic-like [Populus euphratica]
18 Hb_028486_070 0.3434156866 - - hypothetical protein CISIN_1g028119mg [Citrus sinensis]
19 Hb_003786_090 0.3499026729 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
20 Hb_011316_120 0.3540744871 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]

Gene co-expression network

sample Hb_007808_020 Hb_007808_020 Hb_000350_080 Hb_000350_080 Hb_007808_020--Hb_000350_080 Hb_001959_150 Hb_001959_150 Hb_007808_020--Hb_001959_150 Hb_005072_010 Hb_005072_010 Hb_007808_020--Hb_005072_010 Hb_000068_030 Hb_000068_030 Hb_007808_020--Hb_000068_030 Hb_131060_010 Hb_131060_010 Hb_007808_020--Hb_131060_010 Hb_080653_010 Hb_080653_010 Hb_007808_020--Hb_080653_010 Hb_000350_080--Hb_001959_150 Hb_000350_080--Hb_005072_010 Hb_000350_080--Hb_000068_030 Hb_000350_080--Hb_080653_010 Hb_001080_010 Hb_001080_010 Hb_000350_080--Hb_001080_010 Hb_001959_150--Hb_005072_010 Hb_001959_150--Hb_000068_030 Hb_001959_150--Hb_080653_010 Hb_000249_120 Hb_000249_120 Hb_001959_150--Hb_000249_120 Hb_005072_010--Hb_000068_030 Hb_005072_010--Hb_080653_010 Hb_005072_010--Hb_000249_120 Hb_000068_030--Hb_080653_010 Hb_000068_030--Hb_000249_120 Hb_011016_010 Hb_011016_010 Hb_131060_010--Hb_011016_010 Hb_131060_010--Hb_000350_080 Hb_131060_010--Hb_001959_150 Hb_028486_070 Hb_028486_070 Hb_131060_010--Hb_028486_070 Hb_131060_010--Hb_001080_010 Hb_000084_040 Hb_000084_040 Hb_080653_010--Hb_000084_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.204183 0.31206 0.180927 0

CAGE analysis