Hb_000249_120

Information

Type -
Description -
Location Contig249: 215360-217013
Sequence    

Annotation

kegg
ID bvg:104890338
description uncharacterized LOC104890338
nr
ID XP_010279442.1
description PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID F4NCK1
description Putative uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000249_120 0.0 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
2 Hb_167711_040 0.1908869007 - - PREDICTED: cucumisin-like [Jatropha curcas]
3 Hb_000756_020 0.1970453853 - - BnaA05g19440D [Brassica napus]
4 Hb_005072_010 0.1999451991 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
5 Hb_000068_030 0.2004154857 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
6 Hb_003786_090 0.2061312152 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
7 Hb_163268_010 0.2111282303 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
8 Hb_001741_130 0.2112022805 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
9 Hb_001959_150 0.2118757666 - - -
10 Hb_001146_060 0.2198060061 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
11 Hb_008505_020 0.2203704449 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
12 Hb_033835_020 0.2209106057 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_005531_010 0.2247611582 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
14 Hb_002588_040 0.2255380411 - - Pathogenesis-related protein 1 [Theobroma cacao]
15 Hb_002725_060 0.2327617481 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
16 Hb_004994_110 0.2345624299 - - -
17 Hb_002240_040 0.2402064255 - - -
18 Hb_001348_230 0.242020319 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
19 Hb_000563_260 0.248290843 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
20 Hb_000450_020 0.2731314571 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000249_120 Hb_000249_120 Hb_167711_040 Hb_167711_040 Hb_000249_120--Hb_167711_040 Hb_000756_020 Hb_000756_020 Hb_000249_120--Hb_000756_020 Hb_005072_010 Hb_005072_010 Hb_000249_120--Hb_005072_010 Hb_000068_030 Hb_000068_030 Hb_000249_120--Hb_000068_030 Hb_003786_090 Hb_003786_090 Hb_000249_120--Hb_003786_090 Hb_163268_010 Hb_163268_010 Hb_000249_120--Hb_163268_010 Hb_167711_040--Hb_000756_020 Hb_002725_060 Hb_002725_060 Hb_167711_040--Hb_002725_060 Hb_004994_110 Hb_004994_110 Hb_167711_040--Hb_004994_110 Hb_167711_040--Hb_163268_010 Hb_001741_130 Hb_001741_130 Hb_167711_040--Hb_001741_130 Hb_008505_020 Hb_008505_020 Hb_167711_040--Hb_008505_020 Hb_000756_020--Hb_163268_010 Hb_000756_020--Hb_001741_130 Hb_000756_020--Hb_008505_020 Hb_033835_020 Hb_033835_020 Hb_000756_020--Hb_033835_020 Hb_005531_010 Hb_005531_010 Hb_000756_020--Hb_005531_010 Hb_002240_040 Hb_002240_040 Hb_000756_020--Hb_002240_040 Hb_005072_010--Hb_000068_030 Hb_001959_150 Hb_001959_150 Hb_005072_010--Hb_001959_150 Hb_000350_080 Hb_000350_080 Hb_005072_010--Hb_000350_080 Hb_007808_020 Hb_007808_020 Hb_005072_010--Hb_007808_020 Hb_080653_010 Hb_080653_010 Hb_005072_010--Hb_080653_010 Hb_000068_030--Hb_001959_150 Hb_000068_030--Hb_000350_080 Hb_000068_030--Hb_007808_020 Hb_000068_030--Hb_080653_010 Hb_008790_050 Hb_008790_050 Hb_003786_090--Hb_008790_050 Hb_000784_040 Hb_000784_040 Hb_003786_090--Hb_000784_040 Hb_001587_210 Hb_001587_210 Hb_003786_090--Hb_001587_210 Hb_000450_020 Hb_000450_020 Hb_003786_090--Hb_000450_020 Hb_003786_090--Hb_001741_130 Hb_003786_090--Hb_163268_010 Hb_163268_010--Hb_001741_130 Hb_163268_010--Hb_008505_020 Hb_163268_010--Hb_033835_020 Hb_163268_010--Hb_005531_010 Hb_163268_010--Hb_002240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0749783 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.2519 1.36072 0.117906 0

CAGE analysis