Hb_080653_010

Information

Type -
Description -
Location Contig80653: 526-2278
Sequence    

Annotation

kegg
ID rcu:RCOM_0449300
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002532759.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9FIF1
description Probable L-type lectin-domain containing receptor kinase II.1 OS=Arabidopsis thaliana GN=LECRK21 PE=2 SV=1
trembl
ID B9T3E0
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0449300 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase at5g01020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080653_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000350_080 0.1570234924 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
3 Hb_000068_030 0.1830720959 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
4 Hb_005072_010 0.1839330574 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
5 Hb_007808_020 0.187571644 - - -
6 Hb_001959_150 0.1967661764 - - -
7 Hb_000084_040 0.2155555575 - - hypothetical protein RCOM_1007940 [Ricinus communis]
8 Hb_001114_340 0.2299420612 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
9 Hb_000995_070 0.2336438997 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
10 Hb_003754_080 0.2463959003 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
11 Hb_010417_010 0.2627620208 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_004208_100 0.2678402088 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
13 Hb_008516_040 0.2722601381 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003786_090 0.2780766014 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
15 Hb_011316_120 0.2848987096 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
16 Hb_000784_040 0.2849648499 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
17 Hb_005285_010 0.2912587473 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
18 Hb_010174_070 0.291443572 - - -
19 Hb_000948_100 0.2964911207 - - -
20 Hb_002073_120 0.3007467563 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_080653_010 Hb_080653_010 Hb_000350_080 Hb_000350_080 Hb_080653_010--Hb_000350_080 Hb_000068_030 Hb_000068_030 Hb_080653_010--Hb_000068_030 Hb_005072_010 Hb_005072_010 Hb_080653_010--Hb_005072_010 Hb_007808_020 Hb_007808_020 Hb_080653_010--Hb_007808_020 Hb_001959_150 Hb_001959_150 Hb_080653_010--Hb_001959_150 Hb_000084_040 Hb_000084_040 Hb_080653_010--Hb_000084_040 Hb_000350_080--Hb_007808_020 Hb_000350_080--Hb_001959_150 Hb_000350_080--Hb_005072_010 Hb_000350_080--Hb_000068_030 Hb_001080_010 Hb_001080_010 Hb_000350_080--Hb_001080_010 Hb_000068_030--Hb_005072_010 Hb_000068_030--Hb_001959_150 Hb_000068_030--Hb_007808_020 Hb_000249_120 Hb_000249_120 Hb_000068_030--Hb_000249_120 Hb_005072_010--Hb_001959_150 Hb_005072_010--Hb_007808_020 Hb_005072_010--Hb_000249_120 Hb_007808_020--Hb_001959_150 Hb_131060_010 Hb_131060_010 Hb_007808_020--Hb_131060_010 Hb_001959_150--Hb_000249_120 Hb_011316_120 Hb_011316_120 Hb_000084_040--Hb_011316_120 Hb_005285_010 Hb_005285_010 Hb_000084_040--Hb_005285_010 Hb_004157_110 Hb_004157_110 Hb_000084_040--Hb_004157_110 Hb_008516_040 Hb_008516_040 Hb_000084_040--Hb_008516_040 Hb_155384_010 Hb_155384_010 Hb_000084_040--Hb_155384_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0651105 0.358387 1.11406 0.372672 0

CAGE analysis