Hb_001959_150

Information

Type -
Description -
Location Contig1959: 121059-121751
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_150 0.0 - - -
2 Hb_005072_010 0.0626881277 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
3 Hb_000068_030 0.0713188794 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
4 Hb_000350_080 0.0803179323 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
5 Hb_007808_020 0.1031058687 - - -
6 Hb_080653_010 0.1967661764 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000249_120 0.2118757666 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
8 Hb_001080_010 0.218060616 - - -
9 Hb_000948_100 0.2630212315 - - -
10 Hb_131060_010 0.2712300207 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
11 Hb_003786_090 0.2762885842 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
12 Hb_000756_020 0.2935439148 - - BnaA05g19440D [Brassica napus]
13 Hb_163268_010 0.2964671299 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
14 Hb_001741_130 0.2964895274 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
15 Hb_000375_340 0.2983660508 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Populus euphratica]
16 Hb_008505_020 0.2996206181 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_033835_020 0.299824554 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_001146_060 0.301121214 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
19 Hb_005531_010 0.3013319035 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
20 Hb_167711_040 0.3056146677 - - PREDICTED: cucumisin-like [Jatropha curcas]

Gene co-expression network

sample Hb_001959_150 Hb_001959_150 Hb_005072_010 Hb_005072_010 Hb_001959_150--Hb_005072_010 Hb_000068_030 Hb_000068_030 Hb_001959_150--Hb_000068_030 Hb_000350_080 Hb_000350_080 Hb_001959_150--Hb_000350_080 Hb_007808_020 Hb_007808_020 Hb_001959_150--Hb_007808_020 Hb_080653_010 Hb_080653_010 Hb_001959_150--Hb_080653_010 Hb_000249_120 Hb_000249_120 Hb_001959_150--Hb_000249_120 Hb_005072_010--Hb_000068_030 Hb_005072_010--Hb_000350_080 Hb_005072_010--Hb_007808_020 Hb_005072_010--Hb_080653_010 Hb_005072_010--Hb_000249_120 Hb_000068_030--Hb_000350_080 Hb_000068_030--Hb_007808_020 Hb_000068_030--Hb_080653_010 Hb_000068_030--Hb_000249_120 Hb_000350_080--Hb_007808_020 Hb_000350_080--Hb_080653_010 Hb_001080_010 Hb_001080_010 Hb_000350_080--Hb_001080_010 Hb_131060_010 Hb_131060_010 Hb_007808_020--Hb_131060_010 Hb_007808_020--Hb_080653_010 Hb_000084_040 Hb_000084_040 Hb_080653_010--Hb_000084_040 Hb_167711_040 Hb_167711_040 Hb_000249_120--Hb_167711_040 Hb_000756_020 Hb_000756_020 Hb_000249_120--Hb_000756_020 Hb_003786_090 Hb_003786_090 Hb_000249_120--Hb_003786_090 Hb_163268_010 Hb_163268_010 Hb_000249_120--Hb_163268_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.621168 0.873826 0.28891 0

CAGE analysis