Hb_000350_080

Information

Type -
Description -
Location Contig350: 104369-106194
Sequence    

Annotation

kegg
ID pda:103715912
description uncharacterized LOC103715912
nr
ID XP_009764284.1
description PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000350_080 0.0 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
2 Hb_007808_020 0.0572087026 - - -
3 Hb_001959_150 0.0803179323 - - -
4 Hb_005072_010 0.1015917321 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
5 Hb_000068_030 0.1063572469 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
6 Hb_080653_010 0.1570234924 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_001080_010 0.2286091253 - - -
8 Hb_131060_010 0.2399193619 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
9 Hb_000948_100 0.2511094509 - - -
10 Hb_000249_120 0.2749073858 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
11 Hb_000084_040 0.2895025362 - - hypothetical protein RCOM_1007940 [Ricinus communis]
12 Hb_003754_080 0.3148318139 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
13 Hb_003786_090 0.3165751433 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
14 Hb_000375_340 0.3266599307 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Populus euphratica]
15 Hb_018464_060 0.3272979492 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_008516_040 0.3312525108 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000995_070 0.3417966632 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
18 Hb_010417_010 0.3420596733 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
19 Hb_008505_020 0.3430561433 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
20 Hb_033835_020 0.3430648924 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000350_080 Hb_000350_080 Hb_007808_020 Hb_007808_020 Hb_000350_080--Hb_007808_020 Hb_001959_150 Hb_001959_150 Hb_000350_080--Hb_001959_150 Hb_005072_010 Hb_005072_010 Hb_000350_080--Hb_005072_010 Hb_000068_030 Hb_000068_030 Hb_000350_080--Hb_000068_030 Hb_080653_010 Hb_080653_010 Hb_000350_080--Hb_080653_010 Hb_001080_010 Hb_001080_010 Hb_000350_080--Hb_001080_010 Hb_007808_020--Hb_001959_150 Hb_007808_020--Hb_005072_010 Hb_007808_020--Hb_000068_030 Hb_131060_010 Hb_131060_010 Hb_007808_020--Hb_131060_010 Hb_007808_020--Hb_080653_010 Hb_001959_150--Hb_005072_010 Hb_001959_150--Hb_000068_030 Hb_001959_150--Hb_080653_010 Hb_000249_120 Hb_000249_120 Hb_001959_150--Hb_000249_120 Hb_005072_010--Hb_000068_030 Hb_005072_010--Hb_080653_010 Hb_005072_010--Hb_000249_120 Hb_000068_030--Hb_080653_010 Hb_000068_030--Hb_000249_120 Hb_000084_040 Hb_000084_040 Hb_080653_010--Hb_000084_040 Hb_001080_010--Hb_001959_150 Hb_001080_010--Hb_007808_020 Hb_001080_010--Hb_005072_010 Hb_001080_010--Hb_000068_030 Hb_000594_090 Hb_000594_090 Hb_001080_010--Hb_000594_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0214576 0.0404853 0.0171042 0

CAGE analysis