Hb_000594_090

Information

Type -
Description -
Location Contig594: 144523-145718
Sequence    

Annotation

kegg
ID rcu:RCOM_0705650
description Allene oxide cyclase 3, chloroplast precursor, putative (EC:5.3.99.6)
nr
ID XP_011021732.1
description PREDICTED: allene oxide cyclase 3, chloroplastic-like [Populus euphratica]
swissprot
ID Q9LS01
description Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1
trembl
ID B9SEJ3
description Allene oxide cyclase 3, chloroplast, putative OS=Ricinus communis GN=RCOM_0705650 PE=4 SV=1
Gene Ontology
ID GO:0009507
description allene oxide cyclase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50331: 144957-145399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000594_090 0.0 - - PREDICTED: allene oxide cyclase 3, chloroplastic-like [Populus euphratica]
2 Hb_029879_090 0.1972481195 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Jatropha curcas]
3 Hb_000836_490 0.2031361721 - - PREDICTED: E3 SUMO-protein ligase pli1-like [Jatropha curcas]
4 Hb_007885_050 0.2131747693 - - PREDICTED: lignin-forming anionic peroxidase-like [Jatropha curcas]
5 Hb_038134_010 0.2258430307 - - -
6 Hb_000563_260 0.2261971418 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
7 Hb_008725_040 0.2309165519 - - PREDICTED: uncharacterized protein At4g29660 [Nelumbo nucifera]
8 Hb_000062_300 0.2339842391 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
9 Hb_061383_010 0.234177991 - - beta-1,3-glucanase [Hevea brasiliensis]
10 Hb_007426_050 0.2397528076 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
11 Hb_001396_090 0.240967017 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
12 Hb_105602_020 0.2416914491 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
13 Hb_003913_080 0.2418010853 - - rpl27A [Hemiselmis andersenii]
14 Hb_003777_360 0.2464509876 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
15 Hb_014497_080 0.2488412132 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
16 Hb_002588_040 0.2490758385 - - Pathogenesis-related protein 1 [Theobroma cacao]
17 Hb_086692_020 0.2491985677 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
18 Hb_001369_600 0.2581739872 - - kinase, putative [Ricinus communis]
19 Hb_004064_020 0.2586293067 - - hypothetical protein M569_06853, partial [Genlisea aurea]
20 Hb_003891_080 0.2595746305 - - hypothetical protein JCGZ_16710 [Jatropha curcas]

Gene co-expression network

sample Hb_000594_090 Hb_000594_090 Hb_029879_090 Hb_029879_090 Hb_000594_090--Hb_029879_090 Hb_000836_490 Hb_000836_490 Hb_000594_090--Hb_000836_490 Hb_007885_050 Hb_007885_050 Hb_000594_090--Hb_007885_050 Hb_038134_010 Hb_038134_010 Hb_000594_090--Hb_038134_010 Hb_000563_260 Hb_000563_260 Hb_000594_090--Hb_000563_260 Hb_008725_040 Hb_008725_040 Hb_000594_090--Hb_008725_040 Hb_029879_090--Hb_000563_260 Hb_007426_050 Hb_007426_050 Hb_029879_090--Hb_007426_050 Hb_141194_010 Hb_141194_010 Hb_029879_090--Hb_141194_010 Hb_000103_030 Hb_000103_030 Hb_029879_090--Hb_000103_030 Hb_001348_230 Hb_001348_230 Hb_029879_090--Hb_001348_230 Hb_000836_490--Hb_007885_050 Hb_003777_360 Hb_003777_360 Hb_000836_490--Hb_003777_360 Hb_004208_130 Hb_004208_130 Hb_000836_490--Hb_004208_130 Hb_028271_020 Hb_028271_020 Hb_000836_490--Hb_028271_020 Hb_000117_100 Hb_000117_100 Hb_000836_490--Hb_000117_100 Hb_007885_050--Hb_000117_100 Hb_026527_020 Hb_026527_020 Hb_007885_050--Hb_026527_020 Hb_007885_050--Hb_008725_040 Hb_006538_190 Hb_006538_190 Hb_007885_050--Hb_006538_190 Hb_061383_010 Hb_061383_010 Hb_038134_010--Hb_061383_010 Hb_089100_050 Hb_089100_050 Hb_038134_010--Hb_089100_050 Hb_001396_090 Hb_001396_090 Hb_038134_010--Hb_001396_090 Hb_012305_020 Hb_012305_020 Hb_038134_010--Hb_012305_020 Hb_105602_020 Hb_105602_020 Hb_038134_010--Hb_105602_020 Hb_002588_040 Hb_002588_040 Hb_000563_260--Hb_002588_040 Hb_000563_260--Hb_001348_230 Hb_001146_060 Hb_001146_060 Hb_000563_260--Hb_001146_060 Hb_000352_160 Hb_000352_160 Hb_000563_260--Hb_000352_160 Hb_001369_210 Hb_001369_210 Hb_000563_260--Hb_001369_210 Hb_010883_070 Hb_010883_070 Hb_008725_040--Hb_010883_070 Hb_103118_020 Hb_103118_020 Hb_008725_040--Hb_103118_020 Hb_003913_080 Hb_003913_080 Hb_008725_040--Hb_003913_080 Hb_116420_020 Hb_116420_020 Hb_008725_040--Hb_116420_020 Hb_008725_040--Hb_004208_130 Hb_000732_210 Hb_000732_210 Hb_008725_040--Hb_000732_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.081131 0 0.158595 1.08067 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.57759 12.9559 5.80298 4.57157 0.0750261

CAGE analysis