Hb_038134_010

Information

Type -
Description -
Location Contig38134: 1-392
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038134_010 0.0 - - -
2 Hb_061383_010 0.1746553087 - - beta-1,3-glucanase [Hevea brasiliensis]
3 Hb_089100_050 0.1910952338 - - -
4 Hb_001396_090 0.1982481847 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
5 Hb_012305_020 0.205895244 - - beta-1,3-glucanase [Hevea brasiliensis]
6 Hb_105602_020 0.2151853186 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
7 Hb_000594_090 0.2258430307 - - PREDICTED: allene oxide cyclase 3, chloroplastic-like [Populus euphratica]
8 Hb_002588_040 0.2281468325 - - Pathogenesis-related protein 1 [Theobroma cacao]
9 Hb_004942_010 0.2323622851 - - hypothetical protein AMTR_s00057p00201180 [Amborella trichopoda]
10 Hb_000352_180 0.2330701104 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010589_050 0.2340470467 - - -
12 Hb_183612_090 0.2352531385 - - -
13 Hb_002989_040 0.2448504298 - - hypothetical protein 1 [Hevea brasiliensis]
14 Hb_003913_050 0.249056391 - - 60S ribosomal protein L27B [Hevea brasiliensis]
15 Hb_086692_020 0.2512446567 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
16 Hb_001146_060 0.2516709942 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
17 Hb_001348_230 0.2546848937 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
18 Hb_000920_320 0.2550462698 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
19 Hb_000258_180 0.2580310743 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
20 Hb_029879_090 0.2592258817 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Jatropha curcas]

Gene co-expression network

sample Hb_038134_010 Hb_038134_010 Hb_061383_010 Hb_061383_010 Hb_038134_010--Hb_061383_010 Hb_089100_050 Hb_089100_050 Hb_038134_010--Hb_089100_050 Hb_001396_090 Hb_001396_090 Hb_038134_010--Hb_001396_090 Hb_012305_020 Hb_012305_020 Hb_038134_010--Hb_012305_020 Hb_105602_020 Hb_105602_020 Hb_038134_010--Hb_105602_020 Hb_000594_090 Hb_000594_090 Hb_038134_010--Hb_000594_090 Hb_061383_010--Hb_012305_020 Hb_086692_020 Hb_086692_020 Hb_061383_010--Hb_086692_020 Hb_002150_050 Hb_002150_050 Hb_061383_010--Hb_002150_050 Hb_061383_010--Hb_001396_090 Hb_183612_090 Hb_183612_090 Hb_061383_010--Hb_183612_090 Hb_004942_010 Hb_004942_010 Hb_089100_050--Hb_004942_010 Hb_000103_030 Hb_000103_030 Hb_089100_050--Hb_000103_030 Hb_001348_230 Hb_001348_230 Hb_089100_050--Hb_001348_230 Hb_089100_050--Hb_105602_020 Hb_001143_070 Hb_001143_070 Hb_089100_050--Hb_001143_070 Hb_002989_040 Hb_002989_040 Hb_089100_050--Hb_002989_040 Hb_000920_320 Hb_000920_320 Hb_001396_090--Hb_000920_320 Hb_000103_550 Hb_000103_550 Hb_001396_090--Hb_000103_550 Hb_003913_050 Hb_003913_050 Hb_001396_090--Hb_003913_050 Hb_000270_620 Hb_000270_620 Hb_001396_090--Hb_000270_620 Hb_001776_170 Hb_001776_170 Hb_001396_090--Hb_001776_170 Hb_001085_180 Hb_001085_180 Hb_012305_020--Hb_001085_180 Hb_012305_020--Hb_086692_020 Hb_012305_020--Hb_183612_090 Hb_001266_030 Hb_001266_030 Hb_012305_020--Hb_001266_030 Hb_000062_300 Hb_000062_300 Hb_012305_020--Hb_000062_300 Hb_105602_020--Hb_000103_030 Hb_105602_020--Hb_002989_040 Hb_004064_020 Hb_004064_020 Hb_105602_020--Hb_004064_020 Hb_105602_020--Hb_003913_050 Hb_105602_020--Hb_000920_320 Hb_029879_090 Hb_029879_090 Hb_000594_090--Hb_029879_090 Hb_000836_490 Hb_000836_490 Hb_000594_090--Hb_000836_490 Hb_007885_050 Hb_007885_050 Hb_000594_090--Hb_007885_050 Hb_000563_260 Hb_000563_260 Hb_000594_090--Hb_000563_260 Hb_008725_040 Hb_008725_040 Hb_000594_090--Hb_008725_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.177094 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.408393 3.21975 0.899067 0.749462 0

CAGE analysis