Hb_105602_020

Information

Type -
Description -
Location Contig105602: 5185-6661
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04710g
description POPTRDRAFT_733112; hypothetical protein
nr
ID XP_011035598.1
description PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
swissprot
ID Q9LUQ6
description 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1
trembl
ID B9IED6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s04710g PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l19-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105602_020 0.0 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
2 Hb_000103_030 0.1237344351 - - hypothetical protein VITISV_021700 [Vitis vinifera]
3 Hb_002989_040 0.1617266649 - - hypothetical protein 1 [Hevea brasiliensis]
4 Hb_089100_050 0.1642164472 - - -
5 Hb_004064_020 0.1688601624 - - hypothetical protein M569_06853, partial [Genlisea aurea]
6 Hb_003913_050 0.1729416724 - - 60S ribosomal protein L27B [Hevea brasiliensis]
7 Hb_000920_320 0.1917789772 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
8 Hb_159352_010 0.1929118269 - - hypothetical protein JCGZ_12393 [Jatropha curcas]
9 Hb_023051_020 0.1995562154 - - -
10 Hb_001143_070 0.2060521865 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
11 Hb_003226_240 0.2064145312 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
12 Hb_001425_060 0.2087713192 - - conserved hypothetical protein [Ricinus communis]
13 Hb_091433_030 0.2090531619 - - -
14 Hb_001396_090 0.2101482534 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
15 Hb_003052_210 0.2114419831 - - conserved hypothetical protein [Ricinus communis]
16 Hb_108528_010 0.2124083666 - - unnamed protein product [Coffea canephora]
17 Hb_034482_040 0.2128235442 - - aspartate kinase, partial [Francisella tularensis]
18 Hb_001348_230 0.2136173767 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
19 Hb_004942_010 0.2141090017 - - hypothetical protein AMTR_s00057p00201180 [Amborella trichopoda]
20 Hb_029879_090 0.2142914823 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Jatropha curcas]

Gene co-expression network

sample Hb_105602_020 Hb_105602_020 Hb_000103_030 Hb_000103_030 Hb_105602_020--Hb_000103_030 Hb_002989_040 Hb_002989_040 Hb_105602_020--Hb_002989_040 Hb_089100_050 Hb_089100_050 Hb_105602_020--Hb_089100_050 Hb_004064_020 Hb_004064_020 Hb_105602_020--Hb_004064_020 Hb_003913_050 Hb_003913_050 Hb_105602_020--Hb_003913_050 Hb_000920_320 Hb_000920_320 Hb_105602_020--Hb_000920_320 Hb_001143_070 Hb_001143_070 Hb_000103_030--Hb_001143_070 Hb_004461_020 Hb_004461_020 Hb_000103_030--Hb_004461_020 Hb_000103_030--Hb_002989_040 Hb_000103_030--Hb_089100_050 Hb_001425_070 Hb_001425_070 Hb_000103_030--Hb_001425_070 Hb_023051_020 Hb_023051_020 Hb_002989_040--Hb_023051_020 Hb_003226_240 Hb_003226_240 Hb_002989_040--Hb_003226_240 Hb_034482_040 Hb_034482_040 Hb_002989_040--Hb_034482_040 Hb_002989_040--Hb_001143_070 Hb_002989_040--Hb_000920_320 Hb_004942_010 Hb_004942_010 Hb_089100_050--Hb_004942_010 Hb_001348_230 Hb_001348_230 Hb_089100_050--Hb_001348_230 Hb_089100_050--Hb_001143_070 Hb_089100_050--Hb_002989_040 Hb_108528_010 Hb_108528_010 Hb_004064_020--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_004064_020--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_004064_020--Hb_010174_070 Hb_003913_080 Hb_003913_080 Hb_004064_020--Hb_003913_080 Hb_008516_040 Hb_008516_040 Hb_004064_020--Hb_008516_040 Hb_003913_050--Hb_000920_320 Hb_001396_090 Hb_001396_090 Hb_003913_050--Hb_001396_090 Hb_000103_550 Hb_000103_550 Hb_003913_050--Hb_000103_550 Hb_003913_050--Hb_003226_240 Hb_004159_050 Hb_004159_050 Hb_003913_050--Hb_004159_050 Hb_000270_620 Hb_000270_620 Hb_003913_050--Hb_000270_620 Hb_000920_320--Hb_001396_090 Hb_000920_320--Hb_003226_240 Hb_003060_040 Hb_003060_040 Hb_000920_320--Hb_003060_040 Hb_000920_320--Hb_000270_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06257 2.64289 1.36072 0.589531 0

CAGE analysis