Hb_004942_010

Information

Type -
Description -
Location Contig4942: 3592-5991
Sequence    

Annotation

kegg
ID atr:s00057p00201180
description AMTR_s00057p00201180; hypothetical protein
nr
ID ERN16967.1
description hypothetical protein AMTR_s00057p00201180 [Amborella trichopoda]
swissprot
ID -
description -
trembl
ID U5D6B9
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00057p00201180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004942_010 0.0 - - hypothetical protein AMTR_s00057p00201180 [Amborella trichopoda]
2 Hb_089100_050 0.1287349879 - - -
3 Hb_000103_030 0.2089919105 - - hypothetical protein VITISV_021700 [Vitis vinifera]
4 Hb_105602_020 0.2141090017 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
5 Hb_001258_140 0.2158437945 - - -
6 Hb_004942_020 0.2172675837 - - Potassium transporter, putative [Ricinus communis]
7 Hb_007576_030 0.2196431104 - - -
8 Hb_001396_090 0.2257641146 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
9 Hb_002989_040 0.2311112515 - - hypothetical protein 1 [Hevea brasiliensis]
10 Hb_038134_010 0.2323622851 - - -
11 Hb_012586_020 0.2335139246 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
12 Hb_000103_550 0.2369113529 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
13 Hb_001143_070 0.2381677196 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
14 Hb_000261_450 0.2388169637 - - Pectinesterase U1 precursor, putative [Ricinus communis]
15 Hb_113906_010 0.240250063 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
16 Hb_000988_040 0.2408000039 - - -
17 Hb_001425_070 0.2415023101 - - -
18 Hb_000352_180 0.2452314793 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000059_350 0.2473358698 - - glutamate dehydrogenase, putative [Ricinus communis]
20 Hb_001425_060 0.2484173161 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004942_010 Hb_004942_010 Hb_089100_050 Hb_089100_050 Hb_004942_010--Hb_089100_050 Hb_000103_030 Hb_000103_030 Hb_004942_010--Hb_000103_030 Hb_105602_020 Hb_105602_020 Hb_004942_010--Hb_105602_020 Hb_001258_140 Hb_001258_140 Hb_004942_010--Hb_001258_140 Hb_004942_020 Hb_004942_020 Hb_004942_010--Hb_004942_020 Hb_007576_030 Hb_007576_030 Hb_004942_010--Hb_007576_030 Hb_089100_050--Hb_000103_030 Hb_001348_230 Hb_001348_230 Hb_089100_050--Hb_001348_230 Hb_089100_050--Hb_105602_020 Hb_001143_070 Hb_001143_070 Hb_089100_050--Hb_001143_070 Hb_002989_040 Hb_002989_040 Hb_089100_050--Hb_002989_040 Hb_000103_030--Hb_105602_020 Hb_000103_030--Hb_001143_070 Hb_004461_020 Hb_004461_020 Hb_000103_030--Hb_004461_020 Hb_000103_030--Hb_002989_040 Hb_001425_070 Hb_001425_070 Hb_000103_030--Hb_001425_070 Hb_105602_020--Hb_002989_040 Hb_004064_020 Hb_004064_020 Hb_105602_020--Hb_004064_020 Hb_003913_050 Hb_003913_050 Hb_105602_020--Hb_003913_050 Hb_000920_320 Hb_000920_320 Hb_105602_020--Hb_000920_320 Hb_009838_040 Hb_009838_040 Hb_001258_140--Hb_009838_040 Hb_143766_100 Hb_143766_100 Hb_001258_140--Hb_143766_100 Hb_000788_080 Hb_000788_080 Hb_001258_140--Hb_000788_080 Hb_003095_070 Hb_003095_070 Hb_001258_140--Hb_003095_070 Hb_012395_210 Hb_012395_210 Hb_001258_140--Hb_012395_210 Hb_001276_060 Hb_001276_060 Hb_001258_140--Hb_001276_060 Hb_058143_010 Hb_058143_010 Hb_004942_020--Hb_058143_010 Hb_012586_020 Hb_012586_020 Hb_004942_020--Hb_012586_020 Hb_113906_010 Hb_113906_010 Hb_004942_020--Hb_113906_010 Hb_002478_020 Hb_002478_020 Hb_004942_020--Hb_002478_020 Hb_000352_180 Hb_000352_180 Hb_004942_020--Hb_000352_180 Hb_004942_020--Hb_001143_070 Hb_000731_250 Hb_000731_250 Hb_007576_030--Hb_000731_250 Hb_000988_040 Hb_000988_040 Hb_007576_030--Hb_000988_040 Hb_004195_100 Hb_004195_100 Hb_007576_030--Hb_004195_100 Hb_005211_070 Hb_005211_070 Hb_007576_030--Hb_005211_070 Hb_003124_060 Hb_003124_060 Hb_007576_030--Hb_003124_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0154954 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0352615 0.0832184 0.0518937 0.0110896 0

CAGE analysis