Hb_007576_030

Information

Type -
Description -
Location Contig7576: 8384-9089
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_030 0.0 - - -
2 Hb_000731_250 0.1938285849 - - -
3 Hb_004942_010 0.2196431104 - - hypothetical protein AMTR_s00057p00201180 [Amborella trichopoda]
4 Hb_000988_040 0.2305667839 - - -
5 Hb_004195_100 0.2464663868 - - PREDICTED: uncharacterized protein LOC104106427 [Nicotiana tomentosiformis]
6 Hb_005211_070 0.2483137074 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
7 Hb_003124_060 0.2552517347 - - Beta-ureidopropionase, putative [Ricinus communis]
8 Hb_003159_090 0.2581332614 - - -
9 Hb_000380_020 0.2597612278 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
10 Hb_000638_020 0.2777628413 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
11 Hb_000832_230 0.2793313143 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
12 Hb_005224_030 0.2807064531 - - Dipeptide transport ATP-binding protein dppF [Theobroma cacao]
13 Hb_000261_450 0.2888658394 - - Pectinesterase U1 precursor, putative [Ricinus communis]
14 Hb_000281_230 0.2895946451 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
15 Hb_000906_130 0.2899807259 - - -
16 Hb_002928_210 0.2912687532 - - -
17 Hb_000103_550 0.2932198198 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
18 Hb_000676_240 0.2947217428 - - thioredoxin H-type 2 [Hevea brasiliensis]
19 Hb_000059_350 0.2963416499 - - glutamate dehydrogenase, putative [Ricinus communis]
20 Hb_003086_060 0.2968483054 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]

Gene co-expression network

sample Hb_007576_030 Hb_007576_030 Hb_000731_250 Hb_000731_250 Hb_007576_030--Hb_000731_250 Hb_004942_010 Hb_004942_010 Hb_007576_030--Hb_004942_010 Hb_000988_040 Hb_000988_040 Hb_007576_030--Hb_000988_040 Hb_004195_100 Hb_004195_100 Hb_007576_030--Hb_004195_100 Hb_005211_070 Hb_005211_070 Hb_007576_030--Hb_005211_070 Hb_003124_060 Hb_003124_060 Hb_007576_030--Hb_003124_060 Hb_000906_130 Hb_000906_130 Hb_000731_250--Hb_000906_130 Hb_000316_020 Hb_000316_020 Hb_000731_250--Hb_000316_020 Hb_007017_020 Hb_007017_020 Hb_000731_250--Hb_007017_020 Hb_005224_030 Hb_005224_030 Hb_000731_250--Hb_005224_030 Hb_000731_250--Hb_003124_060 Hb_089100_050 Hb_089100_050 Hb_004942_010--Hb_089100_050 Hb_000103_030 Hb_000103_030 Hb_004942_010--Hb_000103_030 Hb_105602_020 Hb_105602_020 Hb_004942_010--Hb_105602_020 Hb_001258_140 Hb_001258_140 Hb_004942_010--Hb_001258_140 Hb_004942_020 Hb_004942_020 Hb_004942_010--Hb_004942_020 Hb_001798_010 Hb_001798_010 Hb_000988_040--Hb_001798_010 Hb_001364_040 Hb_001364_040 Hb_000988_040--Hb_001364_040 Hb_002890_250 Hb_002890_250 Hb_000988_040--Hb_002890_250 Hb_000638_020 Hb_000638_020 Hb_000988_040--Hb_000638_020 Hb_000988_040--Hb_004942_010 Hb_002928_210 Hb_002928_210 Hb_004195_100--Hb_002928_210 Hb_005539_210 Hb_005539_210 Hb_004195_100--Hb_005539_210 Hb_006745_060 Hb_006745_060 Hb_004195_100--Hb_006745_060 Hb_004195_100--Hb_005211_070 Hb_001959_260 Hb_001959_260 Hb_004195_100--Hb_001959_260 Hb_002492_020 Hb_002492_020 Hb_004195_100--Hb_002492_020 Hb_010594_030 Hb_010594_030 Hb_005211_070--Hb_010594_030 Hb_005211_070--Hb_002492_020 Hb_010827_020 Hb_010827_020 Hb_005211_070--Hb_010827_020 Hb_000215_180 Hb_000215_180 Hb_005211_070--Hb_000215_180 Hb_005211_070--Hb_005539_210 Hb_000676_240 Hb_000676_240 Hb_005211_070--Hb_000676_240 Hb_001163_090 Hb_001163_090 Hb_003124_060--Hb_001163_090 Hb_000281_230 Hb_000281_230 Hb_003124_060--Hb_000281_230 Hb_003124_060--Hb_000906_130 Hb_006342_020 Hb_006342_020 Hb_003124_060--Hb_006342_020 Hb_004734_050 Hb_004734_050 Hb_003124_060--Hb_004734_050 Hb_115940_010 Hb_115940_010 Hb_003124_060--Hb_115940_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.464515 0.14451 0.413232 0 15.1741 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9324 28.1205 15.72 7.93155 2.69609

CAGE analysis