Hb_000906_130

Information

Type -
Description -
Location Contig906: 182534-184163
Sequence    

Annotation

kegg
ID pop:POPTR_0016s13760g
description POPTRDRAFT_835601; soluble NSF attachment family protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000906_130 0.0 - - -
2 Hb_003124_060 0.201779663 - - Beta-ureidopropionase, putative [Ricinus communis]
3 Hb_000731_250 0.2036915338 - - -
4 Hb_000084_320 0.2281734438 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
5 Hb_088538_010 0.2376992295 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
6 Hb_005224_030 0.2382565744 - - Dipeptide transport ATP-binding protein dppF [Theobroma cacao]
7 Hb_004734_050 0.2423934408 - - -
8 Hb_006342_020 0.2428491482 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000836_130 0.2437005471 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
10 Hb_148209_060 0.244182509 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
11 Hb_000258_450 0.2477140375 - - -
12 Hb_001159_200 0.2498451394 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
13 Hb_000363_150 0.2518158679 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
14 Hb_001163_090 0.2524444918 - - hypothetical protein POPTR_0009s14920g [Populus trichocarpa]
15 Hb_008931_010 0.2555119712 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
16 Hb_000723_190 0.2580711071 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
17 Hb_005539_240 0.2590239424 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
18 Hb_006745_060 0.259638737 - - -
19 Hb_001369_240 0.2609617856 - - -
20 Hb_115940_010 0.2612901376 - - putative auxin-amidohydrolase precursor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000906_130 Hb_000906_130 Hb_003124_060 Hb_003124_060 Hb_000906_130--Hb_003124_060 Hb_000731_250 Hb_000731_250 Hb_000906_130--Hb_000731_250 Hb_000084_320 Hb_000084_320 Hb_000906_130--Hb_000084_320 Hb_088538_010 Hb_088538_010 Hb_000906_130--Hb_088538_010 Hb_005224_030 Hb_005224_030 Hb_000906_130--Hb_005224_030 Hb_004734_050 Hb_004734_050 Hb_000906_130--Hb_004734_050 Hb_001163_090 Hb_001163_090 Hb_003124_060--Hb_001163_090 Hb_000281_230 Hb_000281_230 Hb_003124_060--Hb_000281_230 Hb_006342_020 Hb_006342_020 Hb_003124_060--Hb_006342_020 Hb_003124_060--Hb_004734_050 Hb_115940_010 Hb_115940_010 Hb_003124_060--Hb_115940_010 Hb_007576_030 Hb_007576_030 Hb_000731_250--Hb_007576_030 Hb_000316_020 Hb_000316_020 Hb_000731_250--Hb_000316_020 Hb_007017_020 Hb_007017_020 Hb_000731_250--Hb_007017_020 Hb_000731_250--Hb_005224_030 Hb_000731_250--Hb_003124_060 Hb_000836_130 Hb_000836_130 Hb_000084_320--Hb_000836_130 Hb_001348_120 Hb_001348_120 Hb_000084_320--Hb_001348_120 Hb_010931_050 Hb_010931_050 Hb_000084_320--Hb_010931_050 Hb_000784_030 Hb_000784_030 Hb_000084_320--Hb_000784_030 Hb_001153_020 Hb_001153_020 Hb_000084_320--Hb_001153_020 Hb_001096_030 Hb_001096_030 Hb_000084_320--Hb_001096_030 Hb_148209_060 Hb_148209_060 Hb_088538_010--Hb_148209_060 Hb_000545_170 Hb_000545_170 Hb_088538_010--Hb_000545_170 Hb_002450_070 Hb_002450_070 Hb_088538_010--Hb_002450_070 Hb_004218_210 Hb_004218_210 Hb_088538_010--Hb_004218_210 Hb_000453_300 Hb_000453_300 Hb_088538_010--Hb_000453_300 Hb_002045_200 Hb_002045_200 Hb_088538_010--Hb_002045_200 Hb_003086_060 Hb_003086_060 Hb_005224_030--Hb_003086_060 Hb_002759_240 Hb_002759_240 Hb_005224_030--Hb_002759_240 Hb_001159_200 Hb_001159_200 Hb_005224_030--Hb_001159_200 Hb_029510_040 Hb_029510_040 Hb_005224_030--Hb_029510_040 Hb_000723_190 Hb_000723_190 Hb_005224_030--Hb_000723_190 Hb_001863_420 Hb_001863_420 Hb_005224_030--Hb_001863_420 Hb_181240_010 Hb_181240_010 Hb_004734_050--Hb_181240_010 Hb_004448_060 Hb_004448_060 Hb_004734_050--Hb_004448_060 Hb_000915_030 Hb_000915_030 Hb_004734_050--Hb_000915_030 Hb_042202_050 Hb_042202_050 Hb_004734_050--Hb_042202_050 Hb_011484_010 Hb_011484_010 Hb_004734_050--Hb_011484_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.333743 0 0 0 0.288941 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02283 1.59197 1.92751 0.610776 0.839049

CAGE analysis