Hb_004734_050

Information

Type -
Description -
Location Contig4734: 51343-57120
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004734_050 0.0 - - -
2 Hb_181240_010 0.1854574144 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_003124_060 0.2193772642 - - Beta-ureidopropionase, putative [Ricinus communis]
4 Hb_004448_060 0.2217845223 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000915_030 0.2245719581 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
6 Hb_042202_050 0.2327859046 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
7 Hb_011484_010 0.2385358386 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_003005_040 0.2404672911 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_026239_010 0.2412908867 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_000906_130 0.2423934408 - - -
11 Hb_002243_070 0.2465800984 - - sodium-bile acid cotransporter, putative [Ricinus communis]
12 Hb_020334_010 0.249759709 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_000608_460 0.2526335303 - - -
14 Hb_001493_120 0.253345419 - - -
15 Hb_000052_020 0.254604545 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
16 Hb_001163_090 0.2556798596 - - hypothetical protein POPTR_0009s14920g [Populus trichocarpa]
17 Hb_004324_080 0.2631174263 - - -
18 Hb_132998_010 0.2657969308 - - hypothetical protein JCGZ_00197 [Jatropha curcas]
19 Hb_069251_010 0.2660218833 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_002809_150 0.2696931403 transcription factor TF Family: M-type hypothetical protein CISIN_1g0283632mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_004734_050 Hb_004734_050 Hb_181240_010 Hb_181240_010 Hb_004734_050--Hb_181240_010 Hb_003124_060 Hb_003124_060 Hb_004734_050--Hb_003124_060 Hb_004448_060 Hb_004448_060 Hb_004734_050--Hb_004448_060 Hb_000915_030 Hb_000915_030 Hb_004734_050--Hb_000915_030 Hb_042202_050 Hb_042202_050 Hb_004734_050--Hb_042202_050 Hb_011484_010 Hb_011484_010 Hb_004734_050--Hb_011484_010 Hb_181240_010--Hb_000915_030 Hb_004324_080 Hb_004324_080 Hb_181240_010--Hb_004324_080 Hb_014568_020 Hb_014568_020 Hb_181240_010--Hb_014568_020 Hb_000608_460 Hb_000608_460 Hb_181240_010--Hb_000608_460 Hb_003005_040 Hb_003005_040 Hb_181240_010--Hb_003005_040 Hb_001163_090 Hb_001163_090 Hb_003124_060--Hb_001163_090 Hb_000281_230 Hb_000281_230 Hb_003124_060--Hb_000281_230 Hb_000906_130 Hb_000906_130 Hb_003124_060--Hb_000906_130 Hb_006342_020 Hb_006342_020 Hb_003124_060--Hb_006342_020 Hb_115940_010 Hb_115940_010 Hb_003124_060--Hb_115940_010 Hb_000258_450 Hb_000258_450 Hb_004448_060--Hb_000258_450 Hb_004448_060--Hb_006342_020 Hb_004448_060--Hb_000608_460 Hb_004448_060--Hb_000915_030 Hb_007904_170 Hb_007904_170 Hb_004448_060--Hb_007904_170 Hb_000915_030--Hb_014568_020 Hb_000915_030--Hb_000608_460 Hb_000363_150 Hb_000363_150 Hb_000915_030--Hb_000363_150 Hb_001284_010 Hb_001284_010 Hb_042202_050--Hb_001284_010 Hb_000052_020 Hb_000052_020 Hb_042202_050--Hb_000052_020 Hb_000156_210 Hb_000156_210 Hb_042202_050--Hb_000156_210 Hb_006738_020 Hb_006738_020 Hb_042202_050--Hb_006738_020 Hb_000997_360 Hb_000997_360 Hb_042202_050--Hb_000997_360 Hb_146680_010 Hb_146680_010 Hb_042202_050--Hb_146680_010 Hb_000399_010 Hb_000399_010 Hb_011484_010--Hb_000399_010 Hb_020334_010 Hb_020334_010 Hb_011484_010--Hb_020334_010 Hb_026239_010 Hb_026239_010 Hb_011484_010--Hb_026239_010 Hb_006132_030 Hb_006132_030 Hb_011484_010--Hb_006132_030 Hb_000853_410 Hb_000853_410 Hb_011484_010--Hb_000853_410 Hb_061802_010 Hb_061802_010 Hb_011484_010--Hb_061802_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0900232 0 0 0 0.223522 0.314309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.30135 2.95948 2.72209 0.91157 3.4865

CAGE analysis