Hb_011484_010

Information

Type -
Description -
Location Contig11484: 19490-24116
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011484_010 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_000399_010 0.1848811578 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
3 Hb_020334_010 0.1880907697 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_026239_010 0.1967799714 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_006132_030 0.2006913476 - - hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]
6 Hb_000853_410 0.2090013313 - - -
7 Hb_061802_010 0.2158123523 - - hypothetical protein VITISV_011986 [Vitis vinifera]
8 Hb_000052_020 0.2223670881 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
9 Hb_001357_010 0.2276178691 - - -
10 Hb_021888_070 0.2352500518 - - Putative CCR4-associated factor 1 like 11 [Glycine soja]
11 Hb_165071_030 0.2371505433 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_004734_050 0.2385358386 - - -
13 Hb_133820_010 0.2391624037 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_000189_140 0.2440445295 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_001373_180 0.2465707385 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
16 Hb_000122_210 0.2506864405 - - -
17 Hb_000283_080 0.2508764929 - - -
18 Hb_004734_010 0.2512043245 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
19 Hb_003906_090 0.2515216804 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
20 Hb_042202_050 0.256231155 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]

Gene co-expression network

sample Hb_011484_010 Hb_011484_010 Hb_000399_010 Hb_000399_010 Hb_011484_010--Hb_000399_010 Hb_020334_010 Hb_020334_010 Hb_011484_010--Hb_020334_010 Hb_026239_010 Hb_026239_010 Hb_011484_010--Hb_026239_010 Hb_006132_030 Hb_006132_030 Hb_011484_010--Hb_006132_030 Hb_000853_410 Hb_000853_410 Hb_011484_010--Hb_000853_410 Hb_061802_010 Hb_061802_010 Hb_011484_010--Hb_061802_010 Hb_000772_040 Hb_000772_040 Hb_000399_010--Hb_000772_040 Hb_000283_080 Hb_000283_080 Hb_000399_010--Hb_000283_080 Hb_036311_020 Hb_036311_020 Hb_000399_010--Hb_036311_020 Hb_003906_090 Hb_003906_090 Hb_000399_010--Hb_003906_090 Hb_001523_020 Hb_001523_020 Hb_000399_010--Hb_001523_020 Hb_020334_010--Hb_026239_010 Hb_001357_010 Hb_001357_010 Hb_020334_010--Hb_001357_010 Hb_069251_010 Hb_069251_010 Hb_020334_010--Hb_069251_010 Hb_029510_040 Hb_029510_040 Hb_020334_010--Hb_029510_040 Hb_020334_010--Hb_061802_010 Hb_026239_010--Hb_061802_010 Hb_026239_010--Hb_001357_010 Hb_000046_160 Hb_000046_160 Hb_026239_010--Hb_000046_160 Hb_001294_010 Hb_001294_010 Hb_026239_010--Hb_001294_010 Hb_005344_030 Hb_005344_030 Hb_006132_030--Hb_005344_030 Hb_000154_010 Hb_000154_010 Hb_006132_030--Hb_000154_010 Hb_133820_010 Hb_133820_010 Hb_006132_030--Hb_133820_010 Hb_000702_080 Hb_000702_080 Hb_006132_030--Hb_000702_080 Hb_000052_020 Hb_000052_020 Hb_006132_030--Hb_000052_020 Hb_168905_010 Hb_168905_010 Hb_000853_410--Hb_168905_010 Hb_001159_120 Hb_001159_120 Hb_000853_410--Hb_001159_120 Hb_005000_070 Hb_005000_070 Hb_000853_410--Hb_005000_070 Hb_000210_220 Hb_000210_220 Hb_000853_410--Hb_000210_220 Hb_000853_410--Hb_061802_010 Hb_009113_070 Hb_009113_070 Hb_000853_410--Hb_009113_070 Hb_061802_010--Hb_000210_220 Hb_000329_180 Hb_000329_180 Hb_061802_010--Hb_000329_180 Hb_001575_020 Hb_001575_020 Hb_061802_010--Hb_001575_020 Hb_071947_010 Hb_071947_010 Hb_061802_010--Hb_071947_010 Hb_005505_020 Hb_005505_020 Hb_061802_010--Hb_005505_020 Hb_000061_300 Hb_000061_300 Hb_061802_010--Hb_000061_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0194307 0.0188514 0 0 0.00429224 0.0125258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0415626 0.0572401 0.0628501 0.0161911 0.07013

CAGE analysis