Hb_001159_120

Information

Type -
Description -
Location Contig1159: 105233-106432
Sequence    

Annotation

kegg
ID rcu:RCOM_1681170
description hypothetical protein
nr
ID XP_012087084.1
description PREDICTED: uncharacterized protein LOC105645945 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K012
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20741 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04778: 105308-106398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_120 0.0 - - PREDICTED: uncharacterized protein LOC105645945 [Jatropha curcas]
2 Hb_004586_170 0.1203140529 - - hypothetical protein PRUPE_ppa011196mg [Prunus persica]
3 Hb_008623_020 0.1228721951 - - PREDICTED: uncharacterized protein At3g17611 [Jatropha curcas]
4 Hb_000120_680 0.1240395054 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
5 Hb_000563_250 0.1244887278 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
6 Hb_000617_150 0.1331561838 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
7 Hb_004306_100 0.1365733314 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
8 Hb_000732_130 0.1373294634 transcription factor TF Family: HSF hypothetical protein JCGZ_17108 [Jatropha curcas]
9 Hb_012107_060 0.1401935914 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
10 Hb_004635_100 0.1407990506 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
11 Hb_000352_270 0.1410088816 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
12 Hb_000853_410 0.1416655054 - - -
13 Hb_000788_090 0.141969034 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 [Glycine max]
14 Hb_001699_130 0.1431047281 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
15 Hb_000117_090 0.1436636879 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
16 Hb_008695_100 0.1471631046 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
17 Hb_001287_030 0.147331632 - - 30S ribosomal protein S31, mitochondrial precursor, putative [Ricinus communis]
18 Hb_029879_130 0.1476212813 - - Derlin-2, putative [Ricinus communis]
19 Hb_004586_340 0.1520836743 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
20 Hb_011173_050 0.1523280229 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]

Gene co-expression network

sample Hb_001159_120 Hb_001159_120 Hb_004586_170 Hb_004586_170 Hb_001159_120--Hb_004586_170 Hb_008623_020 Hb_008623_020 Hb_001159_120--Hb_008623_020 Hb_000120_680 Hb_000120_680 Hb_001159_120--Hb_000120_680 Hb_000563_250 Hb_000563_250 Hb_001159_120--Hb_000563_250 Hb_000617_150 Hb_000617_150 Hb_001159_120--Hb_000617_150 Hb_004306_100 Hb_004306_100 Hb_001159_120--Hb_004306_100 Hb_000788_090 Hb_000788_090 Hb_004586_170--Hb_000788_090 Hb_001047_230 Hb_001047_230 Hb_004586_170--Hb_001047_230 Hb_004586_170--Hb_004306_100 Hb_000979_200 Hb_000979_200 Hb_004586_170--Hb_000979_200 Hb_000732_130 Hb_000732_130 Hb_004586_170--Hb_000732_130 Hb_028486_030 Hb_028486_030 Hb_004586_170--Hb_028486_030 Hb_075449_010 Hb_075449_010 Hb_008623_020--Hb_075449_010 Hb_000062_220 Hb_000062_220 Hb_008623_020--Hb_000062_220 Hb_012019_010 Hb_012019_010 Hb_008623_020--Hb_012019_010 Hb_000928_210 Hb_000928_210 Hb_008623_020--Hb_000928_210 Hb_008623_020--Hb_000617_150 Hb_002256_020 Hb_002256_020 Hb_008623_020--Hb_002256_020 Hb_000120_680--Hb_000617_150 Hb_000240_090 Hb_000240_090 Hb_000120_680--Hb_000240_090 Hb_004635_100 Hb_004635_100 Hb_000120_680--Hb_004635_100 Hb_000120_680--Hb_000563_250 Hb_001699_130 Hb_001699_130 Hb_000120_680--Hb_001699_130 Hb_000622_090 Hb_000622_090 Hb_000120_680--Hb_000622_090 Hb_001616_030 Hb_001616_030 Hb_000563_250--Hb_001616_030 Hb_000563_250--Hb_000240_090 Hb_021409_030 Hb_021409_030 Hb_000563_250--Hb_021409_030 Hb_000086_280 Hb_000086_280 Hb_000563_250--Hb_000086_280 Hb_021409_160 Hb_021409_160 Hb_000563_250--Hb_021409_160 Hb_000617_150--Hb_001699_130 Hb_172932_010 Hb_172932_010 Hb_000617_150--Hb_172932_010 Hb_011534_030 Hb_011534_030 Hb_000617_150--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_000617_150--Hb_001454_190 Hb_008695_100 Hb_008695_100 Hb_000617_150--Hb_008695_100 Hb_004306_100--Hb_000732_130 Hb_004306_100--Hb_002256_020 Hb_004324_370 Hb_004324_370 Hb_004306_100--Hb_004324_370 Hb_000723_080 Hb_000723_080 Hb_004306_100--Hb_000723_080 Hb_004306_100--Hb_001699_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50257 3.70474 1.99268 1.00352 3.75035 2.25479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.96739 7.20781 7.39335 1.35186 3.50764

CAGE analysis