Hb_075449_010

Information

Type -
Description -
Location Contig75449: 1675-5413
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37570g
description POPTRDRAFT_707666; pyridoxal-5'-phosphate-dependent enzyme family protein
nr
ID XP_012071019.1
description PREDICTED: cysteine synthase 2-like [Jatropha curcas]
swissprot
ID P87131
description Cysteine synthase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cys12 PE=3 SV=1
trembl
ID A0A067L5C7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01036 PE=4 SV=1
Gene Ontology
ID GO:0006535
description cysteine synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56974: 1826-5384 , PASA_asmbl_56975: 2494-5384
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075449_010 0.0 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
2 Hb_002863_050 0.0684897668 - - aldose 1-epimerase, putative [Ricinus communis]
3 Hb_008623_020 0.0717087966 - - PREDICTED: uncharacterized protein At3g17611 [Jatropha curcas]
4 Hb_000062_220 0.0724173884 - - BnaC02g35870D [Brassica napus]
5 Hb_012019_010 0.0724501288 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
6 Hb_000614_160 0.0726969016 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
7 Hb_005779_060 0.0750459799 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
8 Hb_004724_080 0.0767113729 - - conserved hypothetical protein [Ricinus communis]
9 Hb_024439_010 0.0771454717 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
10 Hb_004102_110 0.0774942345 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
11 Hb_000676_180 0.0785075979 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
12 Hb_000777_040 0.0786745501 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
13 Hb_002046_180 0.0786764707 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
14 Hb_007317_200 0.0789780146 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000876_070 0.0791738234 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
16 Hb_005725_250 0.0794480208 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
17 Hb_012286_030 0.0798859521 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
18 Hb_005496_140 0.0815100519 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004109_170 0.0819567028 - - PREDICTED: probable ribokinase [Jatropha curcas]
20 Hb_000928_210 0.0821430035 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_075449_010 Hb_075449_010 Hb_002863_050 Hb_002863_050 Hb_075449_010--Hb_002863_050 Hb_008623_020 Hb_008623_020 Hb_075449_010--Hb_008623_020 Hb_000062_220 Hb_000062_220 Hb_075449_010--Hb_000062_220 Hb_012019_010 Hb_012019_010 Hb_075449_010--Hb_012019_010 Hb_000614_160 Hb_000614_160 Hb_075449_010--Hb_000614_160 Hb_005779_060 Hb_005779_060 Hb_075449_010--Hb_005779_060 Hb_005496_140 Hb_005496_140 Hb_002863_050--Hb_005496_140 Hb_000580_180 Hb_000580_180 Hb_002863_050--Hb_000580_180 Hb_005144_160 Hb_005144_160 Hb_002863_050--Hb_005144_160 Hb_001142_030 Hb_001142_030 Hb_002863_050--Hb_001142_030 Hb_003416_010 Hb_003416_010 Hb_002863_050--Hb_003416_010 Hb_000416_040 Hb_000416_040 Hb_002863_050--Hb_000416_040 Hb_008623_020--Hb_000062_220 Hb_008623_020--Hb_012019_010 Hb_000928_210 Hb_000928_210 Hb_008623_020--Hb_000928_210 Hb_000617_150 Hb_000617_150 Hb_008623_020--Hb_000617_150 Hb_002256_020 Hb_002256_020 Hb_008623_020--Hb_002256_020 Hb_000062_220--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_000062_220--Hb_000876_070 Hb_007416_320 Hb_007416_320 Hb_000062_220--Hb_007416_320 Hb_000062_220--Hb_012019_010 Hb_010422_060 Hb_010422_060 Hb_000062_220--Hb_010422_060 Hb_008725_260 Hb_008725_260 Hb_000062_220--Hb_008725_260 Hb_002046_180 Hb_002046_180 Hb_012019_010--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_012019_010--Hb_005463_100 Hb_012019_010--Hb_005779_060 Hb_012019_010--Hb_000876_070 Hb_002110_150 Hb_002110_150 Hb_012019_010--Hb_002110_150 Hb_012019_010--Hb_000614_160 Hb_007389_010 Hb_007389_010 Hb_000614_160--Hb_007389_010 Hb_000260_030 Hb_000260_030 Hb_000614_160--Hb_000260_030 Hb_000614_160--Hb_005496_140 Hb_000614_220 Hb_000614_220 Hb_000614_160--Hb_000614_220 Hb_000614_160--Hb_002046_180 Hb_005779_060--Hb_000876_070 Hb_000016_250 Hb_000016_250 Hb_005779_060--Hb_000016_250 Hb_005779_060--Hb_002046_180 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_005779_060--Hb_002110_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.28331 4.2006 4.68091 5.69954 6.92232 6.36265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.11624 12.3268 9.85995 3.66153 5.30675

CAGE analysis