Hb_000399_010

Information

Type -
Description -
Location Contig399: 72-2975
Sequence    

Annotation

kegg
ID pper:PRUPE_ppb019121mg
description hypothetical protein
nr
ID XP_012487705.1
description PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID M5XLP5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019121mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000399_010 0.0 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
2 Hb_011484_010 0.1848811578 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_000772_040 0.1962057578 - - PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
4 Hb_000283_080 0.2169379917 - - -
5 Hb_036311_020 0.2248838554 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_003906_090 0.229129382 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
7 Hb_001523_020 0.2372119275 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
8 Hb_101808_010 0.2440503159 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
9 Hb_020334_010 0.2487331726 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_000122_210 0.2500939201 - - -
11 Hb_001511_070 0.2522441898 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
12 Hb_001357_010 0.2531244265 - - -
13 Hb_001189_050 0.2572308816 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
14 Hb_039262_010 0.2605261157 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_165071_030 0.2620343139 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000154_010 0.2625121758 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000160_320 0.2633646274 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
18 Hb_002307_170 0.264180647 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
19 Hb_000120_040 0.2644618269 - - -
20 Hb_001294_010 0.2689407187 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]

Gene co-expression network

sample Hb_000399_010 Hb_000399_010 Hb_011484_010 Hb_011484_010 Hb_000399_010--Hb_011484_010 Hb_000772_040 Hb_000772_040 Hb_000399_010--Hb_000772_040 Hb_000283_080 Hb_000283_080 Hb_000399_010--Hb_000283_080 Hb_036311_020 Hb_036311_020 Hb_000399_010--Hb_036311_020 Hb_003906_090 Hb_003906_090 Hb_000399_010--Hb_003906_090 Hb_001523_020 Hb_001523_020 Hb_000399_010--Hb_001523_020 Hb_020334_010 Hb_020334_010 Hb_011484_010--Hb_020334_010 Hb_026239_010 Hb_026239_010 Hb_011484_010--Hb_026239_010 Hb_006132_030 Hb_006132_030 Hb_011484_010--Hb_006132_030 Hb_000853_410 Hb_000853_410 Hb_011484_010--Hb_000853_410 Hb_061802_010 Hb_061802_010 Hb_011484_010--Hb_061802_010 Hb_000012_460 Hb_000012_460 Hb_000772_040--Hb_000012_460 Hb_001703_120 Hb_001703_120 Hb_000772_040--Hb_001703_120 Hb_000865_060 Hb_000865_060 Hb_000772_040--Hb_000865_060 Hb_001294_010 Hb_001294_010 Hb_000772_040--Hb_001294_010 Hb_000160_320 Hb_000160_320 Hb_000772_040--Hb_000160_320 Hb_001511_070 Hb_001511_070 Hb_000283_080--Hb_001511_070 Hb_129910_010 Hb_129910_010 Hb_000283_080--Hb_129910_010 Hb_002307_170 Hb_002307_170 Hb_000283_080--Hb_002307_170 Hb_001898_070 Hb_001898_070 Hb_000283_080--Hb_001898_070 Hb_000122_210 Hb_000122_210 Hb_000283_080--Hb_000122_210 Hb_000020_120 Hb_000020_120 Hb_000283_080--Hb_000020_120 Hb_036311_020--Hb_001523_020 Hb_036311_020--Hb_000283_080 Hb_036311_020--Hb_129910_010 Hb_000362_120 Hb_000362_120 Hb_036311_020--Hb_000362_120 Hb_036311_020--Hb_001511_070 Hb_036311_020--Hb_000160_320 Hb_101808_010 Hb_101808_010 Hb_003906_090--Hb_101808_010 Hb_001189_050 Hb_001189_050 Hb_003906_090--Hb_001189_050 Hb_029510_040 Hb_029510_040 Hb_003906_090--Hb_029510_040 Hb_000019_060 Hb_000019_060 Hb_003906_090--Hb_000019_060 Hb_007645_080 Hb_007645_080 Hb_003906_090--Hb_007645_080 Hb_001357_010 Hb_001357_010 Hb_003906_090--Hb_001357_010 Hb_001780_120 Hb_001780_120 Hb_001523_020--Hb_001780_120 Hb_054127_050 Hb_054127_050 Hb_001523_020--Hb_054127_050 Hb_001222_050 Hb_001222_050 Hb_001523_020--Hb_001222_050 Hb_001523_020--Hb_000362_120 Hb_130194_010 Hb_130194_010 Hb_001523_020--Hb_130194_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0374848 0.0249491 0 0 0.0188633 0.0370437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0228986 0.0900859 0.170771 0.0430136 0.152248

CAGE analysis