Hb_054127_050

Information

Type -
Description -
Location Contig54127: 33643-37257
Sequence    

Annotation

kegg
ID rcu:RCOM_0466950
description hypothetical protein
nr
ID XP_012078037.1
description PREDICTED: uncharacterized protein LOC105638784 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KDB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13059 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054127_050 0.0 - - PREDICTED: uncharacterized protein LOC105638784 isoform X1 [Jatropha curcas]
2 Hb_004724_230 0.1788323729 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
3 Hb_001523_020 0.1863016056 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
4 Hb_000422_120 0.1975424468 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Jatropha curcas]
5 Hb_002513_030 0.2056996116 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
6 Hb_001006_240 0.2230576752 - - -
7 Hb_001242_090 0.2398186689 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
8 Hb_001545_210 0.2481119502 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
9 Hb_001780_120 0.2481215055 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
10 Hb_004553_020 0.2488140066 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
11 Hb_001703_120 0.2546367883 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]
12 Hb_003688_160 0.2595790264 - - Presenilin-like family protein [Populus trichocarpa]
13 Hb_052689_010 0.2615767217 - - heat shock cognate protein [Solanum commersonii]
14 Hb_001008_180 0.2646368051 - - -
15 Hb_001222_050 0.2663380757 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
16 Hb_177179_010 0.2665252244 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
17 Hb_130194_010 0.2665560591 - - PREDICTED: uncharacterized protein LOC104115665 [Nicotiana tomentosiformis]
18 Hb_006268_020 0.268191351 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
19 Hb_003002_030 0.2755343593 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_073452_010 0.2776001322 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_054127_050 Hb_054127_050 Hb_004724_230 Hb_004724_230 Hb_054127_050--Hb_004724_230 Hb_001523_020 Hb_001523_020 Hb_054127_050--Hb_001523_020 Hb_000422_120 Hb_000422_120 Hb_054127_050--Hb_000422_120 Hb_002513_030 Hb_002513_030 Hb_054127_050--Hb_002513_030 Hb_001006_240 Hb_001006_240 Hb_054127_050--Hb_001006_240 Hb_001242_090 Hb_001242_090 Hb_054127_050--Hb_001242_090 Hb_004724_230--Hb_000422_120 Hb_004724_230--Hb_002513_030 Hb_004553_020 Hb_004553_020 Hb_004724_230--Hb_004553_020 Hb_001660_020 Hb_001660_020 Hb_004724_230--Hb_001660_020 Hb_004724_230--Hb_001523_020 Hb_036311_020 Hb_036311_020 Hb_001523_020--Hb_036311_020 Hb_001780_120 Hb_001780_120 Hb_001523_020--Hb_001780_120 Hb_001222_050 Hb_001222_050 Hb_001523_020--Hb_001222_050 Hb_000362_120 Hb_000362_120 Hb_001523_020--Hb_000362_120 Hb_130194_010 Hb_130194_010 Hb_001523_020--Hb_130194_010 Hb_001817_020 Hb_001817_020 Hb_000422_120--Hb_001817_020 Hb_073452_010 Hb_073452_010 Hb_000422_120--Hb_073452_010 Hb_000422_120--Hb_001780_120 Hb_000827_060 Hb_000827_060 Hb_000422_120--Hb_000827_060 Hb_177179_010 Hb_177179_010 Hb_002513_030--Hb_177179_010 Hb_002513_030--Hb_001523_020 Hb_002513_030--Hb_004553_020 Hb_002513_030--Hb_001780_120 Hb_001277_310 Hb_001277_310 Hb_001006_240--Hb_001277_310 Hb_001304_120 Hb_001304_120 Hb_001006_240--Hb_001304_120 Hb_099990_010 Hb_099990_010 Hb_001006_240--Hb_099990_010 Hb_176825_010 Hb_176825_010 Hb_001006_240--Hb_176825_010 Hb_003002_030 Hb_003002_030 Hb_001006_240--Hb_003002_030 Hb_003688_160 Hb_003688_160 Hb_001242_090--Hb_003688_160 Hb_001242_090--Hb_073452_010 Hb_003881_050 Hb_003881_050 Hb_001242_090--Hb_003881_050 Hb_000251_090 Hb_000251_090 Hb_001242_090--Hb_000251_090 Hb_052689_010 Hb_052689_010 Hb_001242_090--Hb_052689_010 Hb_003688_170 Hb_003688_170 Hb_001242_090--Hb_003688_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.28021 0.0438421 0 0.217153 0.0862776 0.494912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0994952 0.0781962 1.91748 0.70508 0.606271

CAGE analysis