Hb_003002_030

Information

Type -
Description -
Location Contig3002: 30468-42994
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003002_030 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_054127_050 0.2755343593 - - PREDICTED: uncharacterized protein LOC105638784 isoform X1 [Jatropha curcas]
3 Hb_001106_050 0.2954050442 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_001006_240 0.2974822048 - - -
5 Hb_001545_210 0.3134602764 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
6 Hb_025311_020 0.3249494835 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
7 Hb_001943_020 0.334678464 - - PREDICTED: (S)-coclaurine N-methyltransferase-like, partial [Populus euphratica]
8 Hb_000165_150 0.3352792699 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
9 Hb_089419_010 0.3360885043 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
10 Hb_000190_240 0.338296791 - - unnamed protein product [Coffea canephora]
11 Hb_001304_120 0.3408622761 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
12 Hb_000422_120 0.3420919867 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Jatropha curcas]
13 Hb_143874_010 0.3432450455 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
14 Hb_000276_050 0.3449793931 - - -
15 Hb_003688_160 0.3533281037 - - Presenilin-like family protein [Populus trichocarpa]
16 Hb_006280_010 0.3538141386 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
17 Hb_177179_010 0.3559072171 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
18 Hb_006911_050 0.3597183268 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
19 Hb_001242_090 0.3631501882 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
20 Hb_003881_050 0.3642698589 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_003002_030 Hb_003002_030 Hb_054127_050 Hb_054127_050 Hb_003002_030--Hb_054127_050 Hb_001106_050 Hb_001106_050 Hb_003002_030--Hb_001106_050 Hb_001006_240 Hb_001006_240 Hb_003002_030--Hb_001006_240 Hb_001545_210 Hb_001545_210 Hb_003002_030--Hb_001545_210 Hb_025311_020 Hb_025311_020 Hb_003002_030--Hb_025311_020 Hb_001943_020 Hb_001943_020 Hb_003002_030--Hb_001943_020 Hb_004724_230 Hb_004724_230 Hb_054127_050--Hb_004724_230 Hb_001523_020 Hb_001523_020 Hb_054127_050--Hb_001523_020 Hb_000422_120 Hb_000422_120 Hb_054127_050--Hb_000422_120 Hb_002513_030 Hb_002513_030 Hb_054127_050--Hb_002513_030 Hb_054127_050--Hb_001006_240 Hb_001242_090 Hb_001242_090 Hb_054127_050--Hb_001242_090 Hb_003881_050 Hb_003881_050 Hb_001106_050--Hb_003881_050 Hb_052689_010 Hb_052689_010 Hb_001106_050--Hb_052689_010 Hb_055101_010 Hb_055101_010 Hb_001106_050--Hb_055101_010 Hb_000251_090 Hb_000251_090 Hb_001106_050--Hb_000251_090 Hb_003688_160 Hb_003688_160 Hb_001106_050--Hb_003688_160 Hb_001106_050--Hb_001242_090 Hb_001277_310 Hb_001277_310 Hb_001006_240--Hb_001277_310 Hb_001304_120 Hb_001304_120 Hb_001006_240--Hb_001304_120 Hb_099990_010 Hb_099990_010 Hb_001006_240--Hb_099990_010 Hb_176825_010 Hb_176825_010 Hb_001006_240--Hb_176825_010 Hb_177179_010 Hb_177179_010 Hb_001545_210--Hb_177179_010 Hb_002289_130 Hb_002289_130 Hb_001545_210--Hb_002289_130 Hb_001545_210--Hb_001242_090 Hb_001545_210--Hb_002513_030 Hb_001545_210--Hb_054127_050 Hb_130194_010 Hb_130194_010 Hb_001545_210--Hb_130194_010 Hb_009615_080 Hb_009615_080 Hb_025311_020--Hb_009615_080 Hb_012424_010 Hb_012424_010 Hb_025311_020--Hb_012424_010 Hb_000820_060 Hb_000820_060 Hb_025311_020--Hb_000820_060 Hb_001045_110 Hb_001045_110 Hb_025311_020--Hb_001045_110 Hb_000190_240 Hb_000190_240 Hb_025311_020--Hb_000190_240 Hb_000296_060 Hb_000296_060 Hb_025311_020--Hb_000296_060 Hb_183672_010 Hb_183672_010 Hb_001943_020--Hb_183672_010 Hb_000226_100 Hb_000226_100 Hb_001943_020--Hb_000226_100 Hb_000440_030 Hb_000440_030 Hb_001943_020--Hb_000440_030 Hb_000705_280 Hb_000705_280 Hb_001943_020--Hb_000705_280 Hb_001943_020--Hb_000190_240 Hb_002078_170 Hb_002078_170 Hb_001943_020--Hb_002078_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00930273 0 0 0.00683297 0 0.00847238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.047789 0.00328367 0.0177745

CAGE analysis